Variant report

Variant	rs4889641
Chromosome Location	chr16:31265541-31265542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10871455	0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs12920848	1.00[AMR][1000 genomes]
rs12934814	1.00[AMR][1000 genomes]
rs1423934	0.89[AMR][1000 genomes]
rs2081224	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2098730	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3948508	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs41374952	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs41441649	0.89[AMR][1000 genomes]
rs4260075	0.96[AFR][1000 genomes]
rs4265814	0.82[AFR][1000 genomes]
rs4889541	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4889637	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889638	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889642	0.89[AMR][1000 genomes]
rs4889643	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6565221	0.89[AMR][1000 genomes]
rs7192718	1.00[AMR][1000 genomes]
rs7194882	1.00[MEX][hapmap]
rs8045402	1.00[MEX][hapmap]
rs8056264	0.81[ASW][hapmap];0.82[LWK][hapmap]
rs8058958	1.00[MEX][hapmap]
rs8063978	0.81[LWK][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes]
rs889552	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs929867	0.89[AMR][1000 genomes]
rs9929801	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
2	nsv1066073	chr16:31219071-31278572	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31262800-31271800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr16:31263000-31271000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr16:31263400-31268400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr16:31264200-31265600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr16:31264200-31268200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr16:31264400-31265600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr16:31264400-31266600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr16:31264600-31266200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr16:31264800-31265600	Enhancers	HepG2	liver
10	chr16:31264800-31265800	Enhancers	Primary B cells from peripheral blood	blood
11	chr16:31265000-31265600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr16:31265000-31265600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr16:31265000-31265600	Flanking Active TSS	A549	lung
14	chr16:31265000-31265600	Enhancers	GM12878-XiMat	blood
15	chr16:31265000-31265600	Enhancers	NHEK	skin
16	chr16:31265200-31265600	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr16:31265200-31265600	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr16:31265200-31265600	Enhancers	Hela-S3	cervix
19	chr16:31265200-31265800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr16:31265200-31270600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr16:31265200-31271400	Weak transcription	Right Atrium	heart
22	chr16:31265200-31271600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr16:31265200-31276600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr16:31265400-31265600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr16:31265400-31265600	Enhancers	K562	blood
26	chr16:31265400-31266600	Enhancers	Primary B cells from cord blood	blood
27	chr16:31265400-31270800	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links