Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10871455	0.91[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12920848	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12934814	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1423934	0.89[AMR][1000 genomes]
rs2098730	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3948508	0.89[AMR][1000 genomes]
rs41374952	0.89[AMR][1000 genomes]
rs41441649	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4260075	0.84[AFR][1000 genomes]
rs4265814	0.98[AFR][1000 genomes]
rs4889541	0.89[AMR][1000 genomes]
rs4889637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889638	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889641	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4889642	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4889643	0.89[AMR][1000 genomes]
rs6565221	0.89[AMR][1000 genomes]
rs7192718	1.00[AMR][1000 genomes]
rs8063978	0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs889552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs929867	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
2	nsv1066073	chr16:31219071-31278572	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31250400-31262600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:31252600-31258000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr16:31253600-31257800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr16:31253800-31259200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr16:31254200-31259000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr16:31256000-31259200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr16:31256000-31259200	Weak transcription	K562	blood
8	chr16:31256600-31264000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr16:31256600-31264200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr16:31257000-31257600	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr16:31257000-31257600	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr16:31257000-31257600	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr16:31257000-31257800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr16:31257200-31257600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr16:31257200-31257600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr16:31257400-31258000	Enhancers	H1 Cell Line	embryonic stem cell

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