Variant report

Variant	rs719861
Chromosome Location	chr10:19918676-19918677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10508591	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10827686	1.00[ASN][1000 genomes]
rs10827694	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11010709	1.00[EUR][1000 genomes]
rs11010711	1.00[EUR][1000 genomes]
rs11010715	1.00[EUR][1000 genomes]
rs11010718	1.00[EUR][1000 genomes]
rs11010791	1.00[ASN][1000 genomes]
rs11812122	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11812625	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11813014	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11813720	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11814692	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11815338	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11815767	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11818123	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11818556	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12255250	1.00[EUR][1000 genomes]
rs12255405	1.00[EUR][1000 genomes]
rs12257306	1.00[EUR][1000 genomes]
rs12261476	1.00[EUR][1000 genomes]
rs12266190	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1326973	0.93[ASN][1000 genomes]
rs1326977	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1326979	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1326980	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1326981	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1326982	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1326984	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1326989	0.88[YRI][hapmap];1.00[ASN][1000 genomes]
rs1409743	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1541025	0.88[ASN][1000 genomes]
rs16918861	1.00[CEU][hapmap]
rs16919150	1.00[CEU][hapmap]
rs16919152	1.00[CEU][hapmap]
rs16919229	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16919231	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16919233	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16919243	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919244	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1819290	0.91[ASN][1000 genomes]
rs1926821	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2018712	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2182591	1.00[EUR][1000 genomes]
rs34243926	0.93[ASN][1000 genomes]
rs34655750	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4348797	0.88[ASN][1000 genomes]
rs5016620	1.00[EUR][1000 genomes]
rs57545058	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57968785	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7069928	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7070245	0.84[EUR][1000 genomes]
rs7070398	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7073886	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7074130	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7077648	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7080580	0.93[ASN][1000 genomes]
rs7087570	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7087709	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7090760	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7091330	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7091938	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7094760	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73595867	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73595884	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73595885	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73595886	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73595888	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74119716	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7894895	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7902178	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7905660	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7905796	0.87[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7906048	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7906180	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7906192	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7906876	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7907015	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7909908	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.85[MKK][hapmap];0.85[YRI][hapmap];0.99[ASN][1000 genomes]
rs7918865	0.88[AFR][1000 genomes]
rs7919538	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7922646	0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9299731	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466764	chr10:19400845-19979434	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550128	chr10:19400845-19979434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2759737	chr10:19694144-20024994	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2758211	chr10:19714637-20024994	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1049295	chr10:19740296-20509036	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv1042877	chr10:19749314-20067572	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv2757373	chr10:19776910-20004996	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv34306	chr10:19777069-20117944	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	esv3518965	chr10:19786251-20061305	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv3518966	chr10:19786310-20061256	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv894931	chr10:19796958-19987644	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv825266	chr10:19807019-20037182	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv831804	chr10:19859400-20035593	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv894933	chr10:19865757-20036080	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19876200-19919000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:19881600-19926600	Weak transcription	Fetal Intestine Small	intestine
3	chr10:19900000-19923000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:19917000-19919200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr10:19917400-19919200	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr10:19917400-19919400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:19917800-19918800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:19917800-19918800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:19917800-19918800	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr10:19917800-19918800	Enhancers	HSMM	muscle
11	chr10:19917800-19918800	Enhancers	HSMMtube	muscle
12	chr10:19917800-19918800	Enhancers	NH-A	brain
13	chr10:19917800-19919000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr10:19917800-19919000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:19917800-19919000	Enhancers	Adipose Nuclei	Adipose
16	chr10:19917800-19919000	Enhancers	Brain Hippocampus Middle	brain
17	chr10:19917800-19919000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr10:19917800-19919000	Enhancers	Fetal Stomach	stomach
19	chr10:19917800-19919000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:19917800-19919200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:19917800-19919200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr10:19917800-19919200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:19917800-19919200	Enhancers	NHLF	lung
24	chr10:19917800-19919400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr10:19917800-19919400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr10:19917800-19919600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:19918000-19918800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr10:19918000-19919000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr10:19918000-19919000	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr10:19918000-19919000	Enhancers	Muscle Satellite Cultured Cells	--
31	chr10:19918000-19919200	Enhancers	Osteobl	bone
32	chr10:19918000-19919400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr10:19918200-19918800	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr10:19918200-19919000	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr10:19918200-19927200	Weak transcription	Right Atrium	heart
36	chr10:19918400-19918800	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr10:19918400-19919000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:19918400-19919000	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr10:19918400-19919200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:19918400-19921000	Weak transcription	Aorta	Aorta
41	chr10:19918400-19926600	Weak transcription	Ovary	ovary
42	chr10:19918600-19918800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:19918600-19918800	Active TSS	Brain Anterior Caudate	brain
44	chr10:19918600-19918800	Enhancers	Fetal Lung	lung
45	chr10:19918600-19919200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr10:19918600-19926600	Weak transcription	Fetal Intestine Large	intestine

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