Variant report

Variant	rs7208538
Chromosome Location	chr17:17314406-17314407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17313196..17314808-chr17:17317887..17319459,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56863923	1.00[EUR][1000 genomes]
rs59206606	1.00[EUR][1000 genomes]
rs7215472	1.00[EUR][1000 genomes]
rs7215537	1.00[EUR][1000 genomes]
rs73288417	1.00[EUR][1000 genomes]
rs9899041	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	nsv1058849	chr17:17308009-17348548	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1058804	chr17:17308984-17348548	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1062207	chr17:17310099-17344599	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv543234	chr17:17310099-17344599	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv574523	chr17:17310886-17347995	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1056137	chr17:17311017-17348939	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv543235	chr17:17311017-17348939	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17302000-17318800	Weak transcription	Right Atrium	heart
2	chr17:17306600-17315400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr17:17307200-17316600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr17:17308000-17322200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr17:17308200-17316600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr17:17310400-17315400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr17:17310400-17317200	Weak transcription	Lung	lung
8	chr17:17311000-17317800	Weak transcription	Fetal Brain Female	brain
9	chr17:17312200-17315800	Weak transcription	Adipose Nuclei	Adipose
10	chr17:17312400-17315000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr17:17312400-17315200	Weak transcription	Dnd41	blood
12	chr17:17312400-17315200	Weak transcription	HUVEC	blood vessel
13	chr17:17312400-17315800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr17:17312400-17317200	Weak transcription	NHLF	lung
15	chr17:17312400-17318800	Weak transcription	HepG2	liver
16	chr17:17312600-17315000	Weak transcription	Osteobl	bone
17	chr17:17312600-17315200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr17:17312600-17315200	Weak transcription	NHDF-Ad	bronchial
19	chr17:17313200-17319400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr17:17313400-17317200	Weak transcription	Pancreas	Pancrea
21	chr17:17313600-17319200	Weak transcription	K562	blood
22	chr17:17313800-17317200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr17:17313800-17317400	Weak transcription	Fetal Brain Male	brain
24	chr17:17314000-17317200	Weak transcription	Thymus	Thymus
25	chr17:17314200-17316400	Weak transcription	Brain Germinal Matrix	brain
26	chr17:17314400-17314800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr17:17314400-17314800	Weak transcription	Hela-S3	cervix
28	chr17:17314400-17315400	Weak transcription	Fetal Thymus	thymus

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