Variant report

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10737514	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10753683	0.97[ASN][1000 genomes]
rs10800108	0.83[EUR][1000 genomes]
rs10918216	0.96[ASN][1000 genomes]
rs10918217	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10918218	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12025040	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1326376	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1425754	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1572541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1572542	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2433137	0.84[CEU][hapmap]
rs6657863	0.87[CHB][hapmap];0.93[JPT][hapmap]
rs7550844	0.82[EUR][1000 genomes]
rs7554904	0.88[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs722259	MGST3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165529600-165531200	Enhancers	Fetal Lung	lung
2	chr1:165529600-165531400	Enhancers	Fetal Heart	heart
3	chr1:165529800-165531000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
4	chr1:165529800-165531000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:165529800-165531000	Enhancers	Brain Anterior Caudate	brain
6	chr1:165529800-165531200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr1:165529800-165531200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr1:165529800-165531200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:165529800-165531200	Enhancers	Right Ventricle	heart
10	chr1:165530000-165531000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:165530000-165531000	Enhancers	Fetal Brain Male	brain
12	chr1:165530000-165531200	Enhancers	Ovary	ovary
13	chr1:165530200-165531000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
14	chr1:165530200-165531000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr1:165530200-165531400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr1:165530600-165531000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
17	chr1:165530600-165531000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:165530600-165531000	Flanking Active TSS	Brain Germinal Matrix	brain
19	chr1:165530800-165531000	Enhancers	Brain Substantia Nigra	brain
20	chr1:165530800-165533600	Weak transcription	Left Ventricle	heart
21	chr1:165530800-165533800	Weak transcription	Right Atrium	heart

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