Variant report

Variant	rs7225456
Chromosome Location	chr17:60012188-60012189
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:60003737..60007017-chr17:60009519..60012194,4	K562	blood:
2	chr17:60002606..60006531-chr17:60006987..60012322,8	MCF-7	breast:
3	chr17:60003737..60005984-chr17:60009990..60013672,4	K562	blood:

Variant related genes	Relation type
ENSG00000108506	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs7219120	0.86[AFR][1000 genomes]
rs9747362	0.80[AFR][1000 genomes]
rs9889643	0.86[AFR][1000 genomes]
rs9904797	0.86[AFR][1000 genomes]
rs9905198	0.86[AFR][1000 genomes]
rs9907648	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9909731	0.86[AFR][1000 genomes]
rs9910165	0.80[AFR][1000 genomes]
rs9915402	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60005400-60018400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:60005800-60017600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr17:60005800-60017800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr17:60005800-60017800	Weak transcription	Primary T cells from cord blood	blood
5	chr17:60005800-60017800	Weak transcription	Adipose Nuclei	Adipose
6	chr17:60005800-60022000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr17:60005800-60022000	Weak transcription	Thymus	Thymus
8	chr17:60005800-60022800	Weak transcription	Brain Angular Gyrus	brain
9	chr17:60006000-60017600	Weak transcription	A549	lung
10	chr17:60006000-60017600	Weak transcription	NH-A	brain
11	chr17:60006000-60017800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr17:60006000-60017800	Weak transcription	HSMM	muscle
13	chr17:60006000-60018000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr17:60006000-60018000	Weak transcription	Duodenum Mucosa	Duodenum
15	chr17:60006000-60018400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr17:60006000-60018600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr17:60006000-60018600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr17:60006000-60019400	Weak transcription	Hela-S3	cervix
19	chr17:60006000-60019600	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr17:60006000-60020400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr17:60006000-60020800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr17:60006000-60021000	Weak transcription	HMEC	breast
23	chr17:60006000-60021200	Weak transcription	Osteobl	bone
24	chr17:60006000-60021400	Weak transcription	HUVEC	blood vessel
25	chr17:60006000-60022000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr17:60006000-60022000	Weak transcription	Fetal Brain Female	brain
27	chr17:60006000-60022000	Weak transcription	HSMMtube	muscle
28	chr17:60006000-60022800	Weak transcription	Brain Anterior Caudate	brain
29	chr17:60006000-60023000	Weak transcription	Brain Hippocampus Middle	brain
30	chr17:60006000-60023600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr17:60006200-60018200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr17:60009800-60018400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr17:60011000-60018000	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr17:60012000-60017800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr17:60012000-60018600	Weak transcription	Primary monocytes fromperipheralblood	blood

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