Variant report

Variant	rs9915402
Chromosome Location	chr17:60071832-60071833
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:60060416..60064562-chr17:60068573..60072345,4	MCF-7	breast:
2	chr17:60071623..60073698-chr17:60077133..60079177,2	K562	blood:
3	chr17:60070989..60072709-chr17:60080027..60082957,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16945796	0.80[AFR][1000 genomes]
rs28435233	0.84[AFR][1000 genomes]
rs28442160	0.82[AFR][1000 genomes]
rs6504080	0.86[ASW][hapmap]
rs7214601	0.84[AFR][1000 genomes]
rs7225456	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8076333	0.85[YRI][hapmap]
rs9747362	0.88[AFR][1000 genomes]
rs9889643	0.84[ASW][hapmap];0.81[LWK][hapmap]
rs9893675	0.84[ASW][hapmap];0.85[MKK][hapmap];0.84[AFR][1000 genomes]
rs9900745	0.85[MKK][hapmap]
rs9904797	0.84[ASW][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap]
rs9905198	0.84[ASW][hapmap];0.81[LWK][hapmap];0.89[MKK][hapmap];0.82[AFR][1000 genomes]
rs9907648	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9909731	0.84[ASW][hapmap];0.82[AFR][1000 genomes]
rs9910165	0.88[AFR][1000 genomes]
rs9912291	0.86[AFR][1000 genomes]
rs9916776	0.84[ASW][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60018000-60072800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr17:60018000-60073400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:60018600-60072600	Strong transcription	Fetal Thymus	thymus
4	chr17:60018800-60073600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr17:60020400-60073200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr17:60020600-60073000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr17:60020800-60073800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr17:60021200-60097000	Strong transcription	Dnd41	blood
9	chr17:60021800-60073600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr17:60025400-60074200	Strong transcription	Liver	Liver
11	chr17:60025400-60107600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr17:60033000-60128400	Weak transcription	Stomach Mucosa	stomach
13	chr17:60034800-60072800	Strong transcription	Placenta	Placenta
14	chr17:60036000-60074000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr17:60042800-60105200	Weak transcription	Psoas Muscle	Psoas
16	chr17:60048400-60072800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr17:60048600-60074200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr17:60048800-60097600	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr17:60050200-60100800	Weak transcription	Small Intestine	intestine
20	chr17:60051600-60073800	Strong transcription	HUES64 Cell Line	embryonic stem cell
21	chr17:60051800-60073600	Strong transcription	Primary B cells from peripheral blood	blood
22	chr17:60052600-60072800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr17:60052600-60073400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr17:60053600-60073600	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr17:60053800-60073200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr17:60054000-60074000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr17:60054200-60072200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr17:60055200-60074000	Strong transcription	Primary T cells from cord blood	blood
29	chr17:60055400-60072600	Strong transcription	Fetal Intestine Large	intestine
30	chr17:60055600-60072800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr17:60055600-60073800	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr17:60055800-60072800	Strong transcription	HepG2	liver
33	chr17:60057600-60072600	Strong transcription	Adipose Nuclei	Adipose
34	chr17:60058600-60072200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr17:60059000-60088000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr17:60059400-60072800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr17:60059800-60075200	Weak transcription	Fetal Heart	heart
38	chr17:60060400-60073800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr17:60060400-60081800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr17:60060400-60086800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr17:60060400-60088000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr17:60060400-60090600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr17:60060400-60096200	Weak transcription	Fetal Brain Male	brain
44	chr17:60060400-60098800	Weak transcription	Gastric	stomach
45	chr17:60060400-60099800	Weak transcription	Aorta	Aorta
46	chr17:60061600-60099600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr17:60062200-60073400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr17:60062400-60081600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr17:60062400-60086400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr17:60062400-60106800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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