Variant report

Variant	rs9893675
Chromosome Location	chr17:60132106-60132107
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:60099767..60102259-chr17:60130440..60133314,2	MCF-7	breast:
2	chr17:60125809..60127843-chr17:60128789..60132797,3	MCF-7	breast:
3	chr17:60131533..60136089-chr17:60136212..60137998,4	MCF-7	breast:
4	chr17:60123757..60127581-chr17:60130272..60133772,4	K562	blood:
5	chr17:60119837..60122417-chr17:60131972..60135352,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs16945766	0.84[ASW][hapmap]
rs16945796	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs17400363	1.00[YRI][hapmap]
rs28435233	1.00[AFR][1000 genomes]
rs28442160	0.98[AFR][1000 genomes]
rs58707352	0.80[AFR][1000 genomes]
rs7214601	1.00[AFR][1000 genomes]
rs7219120	0.85[AFR][1000 genomes]
rs73991963	0.85[AFR][1000 genomes]
rs8076333	1.00[YRI][hapmap]
rs9747362	0.96[AFR][1000 genomes]
rs9889643	1.00[ASW][hapmap];0.94[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9892441	0.85[YRI][hapmap]
rs9900745	0.84[ASW][hapmap];0.92[MKK][hapmap]
rs9904797	1.00[ASW][hapmap];0.89[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9905198	1.00[ASW][hapmap];0.84[LWK][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs9907648	0.84[ASW][hapmap];0.85[MKK][hapmap];0.80[AFR][1000 genomes]
rs9909731	1.00[ASW][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs9910165	0.96[AFR][1000 genomes]
rs9910404	1.00[YRI][hapmap]
rs9912291	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs9915402	0.84[ASW][hapmap];0.85[MKK][hapmap];0.84[AFR][1000 genomes]
rs9916776	1.00[ASW][hapmap];0.89[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60077200-60136800	Strong transcription	Fetal Thymus	thymus
2	chr17:60098600-60139200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr17:60098800-60135000	Strong transcription	Dnd41	blood
4	chr17:60099000-60134200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr17:60099400-60139000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr17:60108000-60141400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:60108800-60139000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr17:60109000-60141200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr17:60110600-60135200	Weak transcription	Aorta	Aorta
10	chr17:60110600-60139800	Weak transcription	Spleen	Spleen
11	chr17:60111000-60133800	Weak transcription	Pancreas	Pancrea
12	chr17:60111200-60140200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr17:60111400-60138400	Weak transcription	Fetal Brain Male	brain
14	chr17:60111400-60140400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr17:60111400-60141400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr17:60115000-60140000	Weak transcription	Gastric	stomach
17	chr17:60115400-60135000	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr17:60116000-60139800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr17:60116200-60139800	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr17:60116400-60133800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr17:60116600-60139000	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr17:60117200-60133800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr17:60117200-60136800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr17:60117400-60139200	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr17:60118000-60135000	Strong transcription	Placenta	Placenta
26	chr17:60119800-60136800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr17:60120000-60133600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr17:60120600-60136800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr17:60121000-60133600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr17:60121600-60136800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr17:60123400-60133800	Weak transcription	HSMMtube	muscle
32	chr17:60124000-60134000	Weak transcription	Brain Hippocampus Middle	brain
33	chr17:60124000-60136800	Weak transcription	Fetal Heart	heart
34	chr17:60124200-60133000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr17:60124200-60135400	Weak transcription	Right Atrium	heart
36	chr17:60124200-60139200	Weak transcription	Right Ventricle	heart
37	chr17:60125000-60133800	Weak transcription	Psoas Muscle	Psoas
38	chr17:60126200-60132600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr17:60126200-60133000	Weak transcription	Lung	lung
40	chr17:60126200-60133800	Weak transcription	Left Ventricle	heart
41	chr17:60126200-60141600	Weak transcription	Esophagus	oesophagus
42	chr17:60126600-60136600	Weak transcription	Colonic Mucosa	Colon
43	chr17:60127200-60132600	Weak transcription	Ovary	ovary
44	chr17:60127600-60133600	Strong transcription	HSMM	muscle
45	chr17:60127800-60132400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr17:60128800-60132400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr17:60128800-60132400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr17:60128800-60132400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr17:60128800-60132400	Weak transcription	Fetal Intestine Small	intestine
50	chr17:60128800-60132600	Weak transcription	Thymus	Thymus

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