Variant report

Variant	rs28442160
Chromosome Location	chr17:60099300-60099301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:60097595..60100490-chr17:60100782..60103714,3	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16945796	0.98[AFR][1000 genomes]
rs28435233	0.98[AFR][1000 genomes]
rs58707352	0.82[AFR][1000 genomes]
rs7214601	0.98[AFR][1000 genomes]
rs7219120	0.87[AFR][1000 genomes]
rs73991963	0.83[AFR][1000 genomes]
rs9747362	0.93[AFR][1000 genomes]
rs9889643	0.87[AFR][1000 genomes]
rs9893675	0.98[AFR][1000 genomes]
rs9904797	0.83[AFR][1000 genomes]
rs9905198	0.87[AFR][1000 genomes]
rs9909731	0.87[AFR][1000 genomes]
rs9910165	0.93[AFR][1000 genomes]
rs9912291	0.96[AFR][1000 genomes]
rs9915402	0.82[AFR][1000 genomes]
rs9916776	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60025400-60107600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:60033000-60128400	Weak transcription	Stomach Mucosa	stomach
3	chr17:60042800-60105200	Weak transcription	Psoas Muscle	Psoas
4	chr17:60050200-60100800	Weak transcription	Small Intestine	intestine
5	chr17:60060400-60099800	Weak transcription	Aorta	Aorta
6	chr17:60061600-60099600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr17:60062400-60106800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr17:60069200-60107600	Weak transcription	Spleen	Spleen
9	chr17:60072400-60100600	Weak transcription	Right Ventricle	heart
10	chr17:60074600-60123800	Weak transcription	Right Atrium	heart
11	chr17:60075800-60114400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr17:60077200-60136800	Strong transcription	Fetal Thymus	thymus
13	chr17:60077800-60099800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:60081800-60111600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr17:60087000-60102200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr17:60088400-60107600	Weak transcription	Pancreas	Pancrea
17	chr17:60088600-60100000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr17:60088600-60100200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr17:60088600-60100200	Weak transcription	Ovary	ovary
20	chr17:60088600-60100600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr17:60088600-60100600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr17:60088600-60100800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr17:60088600-60105200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr17:60088600-60105400	Weak transcription	Esophagus	oesophagus
25	chr17:60088600-60106800	Weak transcription	Fetal Heart	heart
26	chr17:60088800-60099800	Weak transcription	Brain Anterior Caudate	brain
27	chr17:60089200-60099600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr17:60089200-60100000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr17:60089200-60100600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr17:60094600-60113200	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr17:60095000-60103800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr17:60095000-60112600	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr17:60095000-60113200	Strong transcription	Duodenum Mucosa	Duodenum
34	chr17:60095200-60103800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr17:60095600-60105800	Weak transcription	Brain Angular Gyrus	brain
36	chr17:60095800-60103200	Strong transcription	Fetal Intestine Small	intestine
37	chr17:60095800-60103200	Strong transcription	Fetal Stomach	stomach
38	chr17:60095800-60103800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr17:60095800-60112600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr17:60095800-60113000	Strong transcription	Fetal Muscle Trunk	muscle
41	chr17:60096000-60103400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr17:60096000-60103800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr17:60096000-60105200	Weak transcription	NHLF	lung
44	chr17:60096000-60113000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr17:60096800-60105400	Weak transcription	Fetal Brain Male	brain
46	chr17:60097000-60099600	Weak transcription	NH-A	brain
47	chr17:60097000-60102800	Weak transcription	NHEK	skin
48	chr17:60097000-60113000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr17:60097000-60113000	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr17:60097400-60100800	Weak transcription	Fetal Brain Female	brain

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