Variant report

Variant	rs7225565
Chromosome Location	chr17:38156270-38156271
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11078932	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11555254	1.00[EUR][1000 genomes]
rs11555255	0.97[EUR][1000 genomes]
rs11654473	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2012	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2227316	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2827	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36006659	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3859188	0.97[EUR][1000 genomes]
rs58212353	0.98[EUR][1000 genomes]
rs60701125	1.00[ASN][1000 genomes]
rs6503529	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7217241	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7217694	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7222093	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222556	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7224260	1.00[EUR][1000 genomes]
rs72832957	1.00[ASN][1000 genomes]
rs72832958	1.00[ASN][1000 genomes]
rs72832961	1.00[ASN][1000 genomes]
rs72832962	1.00[ASN][1000 genomes]
rs72832964	1.00[ASN][1000 genomes]
rs72832965	1.00[ASN][1000 genomes]
rs72832966	1.00[ASN][1000 genomes]
rs72832971	1.00[ASN][1000 genomes]
rs72832987	1.00[ASN][1000 genomes]
rs72832988	1.00[ASN][1000 genomes]
rs72832989	1.00[ASN][1000 genomes]
rs72832991	1.00[ASN][1000 genomes]
rs72834789	1.00[ASN][1000 genomes]
rs8065244	1.00[ASN][1000 genomes]
rs8068076	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8073732	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8080546	0.98[EUR][1000 genomes]
rs9894543	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9912981	0.98[EUR][1000 genomes]
rs9913535	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9916279	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv908220	chr17:38153473-38175426	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7225565	MED24	cis	Muscle Skeletal	GTEx

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38147400-38157400	Weak transcription	Fetal Brain Male	brain
2	chr17:38150600-38157200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr17:38152200-38160600	Weak transcription	Psoas Muscle	Psoas
4	chr17:38152200-38160800	Weak transcription	K562	blood
5	chr17:38153200-38158400	Weak transcription	Fetal Kidney	kidney
6	chr17:38153200-38166400	Weak transcription	Fetal Lung	lung
7	chr17:38153400-38158000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr17:38153400-38166200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr17:38153400-38166600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr17:38153600-38156800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr17:38153600-38160400	Weak transcription	HSMMtube	muscle
12	chr17:38153600-38160600	Weak transcription	Stomach Mucosa	stomach
13	chr17:38153800-38156400	Weak transcription	Osteobl	bone
14	chr17:38153800-38157000	Weak transcription	Primary B cells from cord blood	blood
15	chr17:38153800-38160600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr17:38153800-38166200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr17:38153800-38166200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr17:38153800-38172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr17:38154000-38156800	Weak transcription	NHLF	lung
20	chr17:38154200-38156400	Weak transcription	Brain Substantia Nigra	brain
21	chr17:38154200-38156400	Weak transcription	Ovary	ovary
22	chr17:38154200-38157200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr17:38154200-38157400	Weak transcription	Brain Germinal Matrix	brain
24	chr17:38154200-38161000	Weak transcription	Lung	lung
25	chr17:38154200-38166400	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr17:38154400-38156400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr17:38154400-38156600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr17:38154400-38156600	Weak transcription	Colonic Mucosa	Colon
29	chr17:38154400-38156800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr17:38154400-38157000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr17:38154400-38157000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr17:38154400-38157000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr17:38154400-38157000	Weak transcription	Right Ventricle	heart
34	chr17:38154400-38157000	Weak transcription	NHEK	skin
35	chr17:38154400-38157200	Weak transcription	HMEC	breast
36	chr17:38154400-38157400	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr17:38154400-38157600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr17:38154400-38157800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr17:38154400-38157800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr17:38154400-38158400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr17:38154400-38158800	Weak transcription	Brain Cingulate Gyrus	brain
42	chr17:38154400-38160400	Weak transcription	HepG2	liver
43	chr17:38154400-38166200	Weak transcription	Dnd41	blood
44	chr17:38154400-38166400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr17:38154600-38156400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr17:38154600-38156600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr17:38154600-38156600	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr17:38154600-38156800	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr17:38154600-38156800	Weak transcription	Brain Hippocampus Middle	brain
50	chr17:38154600-38156800	Weak transcription	Duodenum Mucosa	Duodenum

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