Variant report

Variant	rs9913535
Chromosome Location	chr17:38158763-38158764
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11078932	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11555254	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11555255	0.95[EUR][1000 genomes]
rs11654473	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2012	0.93[CEU][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2227316	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2827	1.00[CEU][hapmap];0.83[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36006659	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3859188	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs58212353	0.96[EUR][1000 genomes]
rs60701125	1.00[ASN][1000 genomes]
rs6503529	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7217241	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7217694	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7222093	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7222556	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7224260	0.94[CEU][hapmap];0.98[EUR][1000 genomes]
rs7225565	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72832957	1.00[ASN][1000 genomes]
rs72832958	1.00[ASN][1000 genomes]
rs72832961	1.00[ASN][1000 genomes]
rs72832962	1.00[ASN][1000 genomes]
rs72832964	1.00[ASN][1000 genomes]
rs72832965	1.00[ASN][1000 genomes]
rs72832966	1.00[ASN][1000 genomes]
rs72832971	1.00[ASN][1000 genomes]
rs72832987	1.00[ASN][1000 genomes]
rs72832988	1.00[ASN][1000 genomes]
rs72832989	1.00[ASN][1000 genomes]
rs72832991	1.00[ASN][1000 genomes]
rs72834789	1.00[ASN][1000 genomes]
rs8065244	1.00[ASN][1000 genomes]
rs8068076	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8073732	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8080546	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9894543	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9912981	0.81[YRI][hapmap];0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9916279	1.00[CEU][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv908220	chr17:38153473-38175426	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9913535	MED24	cis	Muscle Skeletal	GTEx

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38152200-38160600	Weak transcription	Psoas Muscle	Psoas
2	chr17:38152200-38160800	Weak transcription	K562	blood
3	chr17:38153200-38166400	Weak transcription	Fetal Lung	lung
4	chr17:38153400-38166200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr17:38153400-38166600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr17:38153600-38160400	Weak transcription	HSMMtube	muscle
7	chr17:38153600-38160600	Weak transcription	Stomach Mucosa	stomach
8	chr17:38153800-38160600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr17:38153800-38166200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr17:38153800-38166200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr17:38153800-38172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr17:38154200-38161000	Weak transcription	Lung	lung
13	chr17:38154200-38166400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr17:38154400-38158800	Weak transcription	Brain Cingulate Gyrus	brain
15	chr17:38154400-38160400	Weak transcription	HepG2	liver
16	chr17:38154400-38166200	Weak transcription	Dnd41	blood
17	chr17:38154400-38166400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr17:38154600-38160800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr17:38154600-38166200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr17:38154600-38166400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr17:38154600-38170000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr17:38154600-38170200	Weak transcription	Esophagus	oesophagus
23	chr17:38154800-38158800	Weak transcription	Fetal Intestine Small	intestine
24	chr17:38154800-38159200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr17:38154800-38173600	Weak transcription	Thymus	Thymus
26	chr17:38155000-38158800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr17:38155000-38158800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr17:38155000-38160600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr17:38155000-38160600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr17:38155000-38166200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr17:38155000-38166400	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr17:38155000-38170000	Weak transcription	HSMM	muscle
33	chr17:38155000-38173600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr17:38155000-38174000	Weak transcription	Fetal Brain Female	brain
35	chr17:38155400-38170200	Weak transcription	Placenta	Placenta
36	chr17:38155600-38164200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr17:38155600-38166600	Weak transcription	Fetal Thymus	thymus
38	chr17:38155600-38169600	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr17:38155600-38169800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr17:38155800-38160400	Weak transcription	Fetal Muscle Leg	muscle
41	chr17:38155800-38161000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr17:38155800-38171800	Weak transcription	Spleen	Spleen

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