Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:11665029..11667238-chr18:11692110..11694200,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-677O4.1.1-1	chr18:11666455-11670156	NONHSAT058101

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12454527	0.83[ASN][1000 genomes]
rs12605129	0.95[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12607424	0.87[ASN][1000 genomes]
rs12607713	0.83[ASN][1000 genomes]
rs12954257	0.91[ASN][1000 genomes]
rs12957891	0.80[ASN][1000 genomes]
rs12960691	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12961855	0.91[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12962122	0.83[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12962341	0.87[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12964976	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12966339	0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs12966486	0.91[ASN][1000 genomes]
rs12967201	0.80[CEU][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs12967203	0.83[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs12971196	0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs35150497	0.88[ASN][1000 genomes]
rs4541146	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56392464	0.86[ASN][1000 genomes]
rs7226488	0.88[ASN][1000 genomes]
rs7230653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066659	chr18:11246502-11709409	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11666400-11667200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr18:11666400-11669400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:11666600-11667200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:11666600-11668800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr18:11666800-11668600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr18:11667000-11668600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr18:11667000-11668600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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