Variant report

Variant	rs723212
Chromosome Location	chr10:61725913-61725914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61664106..61669849-chr10:61722794..61729304,18	MCF-7	breast:
2	chr10:61723902..61726876-chr10:61727775..61734493,6	MCF-7	breast:
3	chr10:61703565..61709814-chr10:61724833..61727412,7	MCF-7	breast:
4	chr10:61725312..61726975-chr10:61730128..61731760,3	MCF-7	breast:
5	chr10:61720365..61722012-chr10:61725075..61727213,2	K562	blood:
6	chr10:61720365..61721882-chr10:61725075..61726939,2	K562	blood:
7	chr10:61702957..61706196-chr10:61723593..61729124,6	MCF-7	breast:
8	chr10:61722294..61728024-chr10:61729019..61732637,6	K562	blood:
9	chr10:61707056..61709767-chr10:61725475..61727127,2	MCF-7	breast:
10	chr10:61725526..61727186-chr10:61748882..61750864,2	MCF-7	breast:
11	chr10:61664953..61667723-chr10:61725455..61729053,4	K562	blood:
12	chr10:61717909..61722906-chr10:61724345..61729038,7	MCF-7	breast:
13	chr10:61663484..61669507-chr10:61721042..61729860,16	MCF-7	breast:
14	chr10:61724265..61726932-chr22:32953198..32955015,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108091	Chromatin interaction
ENSG00000235931	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10821618	0.84[CEU][hapmap]
rs10994096	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10994108	0.82[AMR][1000 genomes]
rs1171853	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1171854	1.00[CEU][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1171855	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2053661	0.81[CEU][hapmap]
rs2450455	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs3851250	0.81[CEU][hapmap]
rs3862863	0.82[AMR][1000 genomes]
rs4948250	0.81[CEU][hapmap]
rs7078432	0.81[CEU][hapmap]
rs968626	0.81[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs723212	EGR2	cis	parietal	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61719400-61730600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:61723000-61726400	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:61724400-61727200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:61724400-61727200	Enhancers	HMEC	breast
5	chr10:61724600-61727200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:61724600-61728200	Enhancers	Placenta	Placenta
7	chr10:61724800-61727200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:61725000-61727200	Enhancers	Hela-S3	cervix
9	chr10:61725200-61726000	Enhancers	Fetal Intestine Large	intestine
10	chr10:61725200-61726800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:61725200-61727000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr10:61725200-61727000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr10:61725200-61727200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:61725200-61727200	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr10:61725200-61727200	Enhancers	K562	blood
16	chr10:61725200-61728200	Enhancers	Placenta Amnion	Placenta Amnion
17	chr10:61725400-61726200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:61725400-61727000	Enhancers	H9 Cell Line	embryonic stem cell
19	chr10:61725400-61727400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:61725600-61727400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:61725600-61730800	Weak transcription	A549	lung
22	chr10:61725800-61726800	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr10:61725800-61726800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:61725800-61726800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr10:61725800-61726800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:61725800-61726800	Weak transcription	Esophagus	oesophagus
27	chr10:61725800-61726800	Weak transcription	Gastric	stomach
28	chr10:61725800-61727200	Enhancers	NHEK	skin
29	chr10:61725800-61728000	Weak transcription	Pancreas	Pancrea
30	chr10:61725800-61728200	Weak transcription	Stomach Mucosa	stomach
31	chr10:61725800-61731400	Weak transcription	Fetal Intestine Small	intestine

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