Variant report

Variant	rs968626
Chromosome Location	chr10:61722957-61722958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:11)
CpG islands
(count:0)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:11 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:61722400-61722974	ECC-1	luminal epithelium:	n/a	n/a
2	NFIC	chr10:61722084-61723173	ECC-1	luminal epithelium:	n/a	n/a
3	NFIC	chr10:61722271-61723066	ECC-1	luminal epithelium:	n/a	n/a
4	TCF12	chr10:61722383-61723089	ECC-1	luminal epithelium:	n/a	n/a
5	FOXM1	chr10:61722272-61723153	ECC-1	luminal epithelium:	n/a	n/a
6	TEAD4	chr10:61722340-61723034	ECC-1	luminal epithelium:	n/a	n/a
7	EP300	chr10:61722361-61723025	ECC-1	luminal epithelium:	n/a	n/a
8	MAX	chr10:61722418-61723042	ECC-1	luminal epithelium:	n/a	n/a
9	EP300	chr10:61722251-61723130	ECC-1	luminal epithelium:	n/a	n/a
10	TCF12	chr10:61722199-61723178	ECC-1	luminal epithelium:	n/a	n/a
11	TEAD4	chr10:61722277-61723080	ECC-1	luminal epithelium:	n/a	n/a

No data

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:61664106..61669849-chr10:61722794..61729304,18	MCF-7	breast:
2	chr10:61722294..61728024-chr10:61729019..61732637,6	K562	blood:
3	chr10:61663484..61669507-chr10:61721042..61729860,16	MCF-7	breast:

No data

Variant related genes	Relation type
C10orf40	TF binding region
ENSG00000108091	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10821618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821619	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10821620	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10994088	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10994091	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1171853	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1171854	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1171855	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2053661	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2450455	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3099373	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3843241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3851250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3910925	0.82[CEU][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap]
rs4301740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7069483	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078432	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7078446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7099657	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723212	0.81[CEU][hapmap]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61719400-61730600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:61719600-61724600	Weak transcription	Placenta	Placenta
3	chr10:61719600-61725400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:61719800-61725200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:61722200-61723000	Enhancers	Brain Angular Gyrus	brain
6	chr10:61722400-61723000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:61722400-61723000	Enhancers	Brain Anterior Caudate	brain
8	chr10:61722400-61723000	Enhancers	Brain Hippocampus Middle	brain
9	chr10:61722600-61723000	Enhancers	Brain Cingulate Gyrus	brain
10	chr10:61722600-61723000	Enhancers	Brain Substantia Nigra	brain
11	chr10:61722600-61723000	Enhancers	K562	blood
12	chr10:61722800-61723000	Enhancers	Pancreas	Pancrea
13	chr10:61722800-61723200	Enhancers	Placenta Amnion	Placenta Amnion

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