Variant report

Variant	rs7233843
Chromosome Location	chr18:11891415-11891416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:11886286..11887914-chr18:11890208..11892382,2	K562	blood:
2	chr18:11890272..11892139-chr18:11894063..11896941,2	MCF-7	breast:
3	chr18:11885013..11887914-chr18:11888832..11891708,3	K562	blood:

Variant related genes	Relation type
ENSG00000154889	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12455436	0.98[ASN][1000 genomes]
rs12456011	0.98[ASN][1000 genomes]
rs12457818	0.98[ASN][1000 genomes]
rs12458375	0.98[ASN][1000 genomes]
rs34932177	0.98[ASN][1000 genomes]
rs59240143	0.83[EUR][1000 genomes]
rs6650615	0.84[EUR][1000 genomes]
rs9951637	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833590	chr18:11757329-11924539	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1055453	chr18:11776790-12110135	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv543654	chr18:11776790-12110135	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv909382	chr18:11870015-11892860	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11873200-11902000	Weak transcription	Fetal Heart	heart
2	chr18:11876800-11902600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:11877000-11902400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr18:11878200-11895000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr18:11878200-11902400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:11880000-11907600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr18:11880600-11891600	Strong transcription	Adipose Nuclei	Adipose
8	chr18:11881600-11898400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr18:11881800-11906200	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr18:11882400-11907000	Weak transcription	Small Intestine	intestine
11	chr18:11882800-11895600	Weak transcription	NHDF-Ad	bronchial
12	chr18:11883400-11897000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr18:11883600-11893600	Weak transcription	HUVEC	blood vessel
14	chr18:11883600-11896800	Strong transcription	Fetal Intestine Small	intestine
15	chr18:11883600-11907000	Weak transcription	NH-A	brain
16	chr18:11883800-11894200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr18:11883800-11898400	Strong transcription	Fetal Stomach	stomach
18	chr18:11884000-11891800	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr18:11884000-11893000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
20	chr18:11884000-11893400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr18:11884000-11893800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr18:11884000-11893800	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr18:11884000-11894200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr18:11884000-11897000	Strong transcription	Skeletal Muscle Male	skeletal muscle
25	chr18:11884000-11897200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr18:11884000-11898200	Strong transcription	Fetal Muscle Leg	muscle
27	chr18:11884000-11898800	Strong transcription	Thymus	Thymus
28	chr18:11884000-11899800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr18:11884000-11906200	Strong transcription	Fetal Thymus	thymus
30	chr18:11884200-11892000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr18:11884200-11892200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr18:11884200-11893600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr18:11884200-11897000	Strong transcription	Dnd41	blood
34	chr18:11884400-11892000	Strong transcription	Placenta	Placenta
35	chr18:11884600-11894000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr18:11884800-11891800	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr18:11885000-11894200	Strong transcription	Spleen	Spleen
38	chr18:11885000-11905400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr18:11885400-11907000	Weak transcription	HMEC	breast
40	chr18:11885600-11905800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr18:11885600-11907400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr18:11885800-11893400	Strong transcription	Primary B cells from peripheral blood	blood
43	chr18:11885800-11895000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr18:11886000-11893600	Strong transcription	Liver	Liver
45	chr18:11886600-11891600	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr18:11886600-11903200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr18:11886600-11906200	Weak transcription	Fetal Kidney	kidney
48	chr18:11886800-11892000	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr18:11886800-11902200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr18:11886800-11902400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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