Variant report

Variant	rs9951637
Chromosome Location	chr18:11896124-11896125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:11890272..11892139-chr18:11894063..11896941,2	MCF-7	breast:
2	chr18:11893913..11896539-chr18:11907157..11909387,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154889	Chromatin interaction
ENSG00000273141	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12455436	0.81[ASN][1000 genomes]
rs12456011	0.81[ASN][1000 genomes]
rs12457818	0.81[ASN][1000 genomes]
rs12458375	0.81[ASN][1000 genomes]
rs28664701	0.83[EUR][1000 genomes]
rs34932177	0.81[ASN][1000 genomes]
rs675204	0.96[ASN][1000 genomes]
rs7233843	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833590	chr18:11757329-11924539	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1055453	chr18:11776790-12110135	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv543654	chr18:11776790-12110135	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv1059775	chr18:11892845-11911143	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11873200-11902000	Weak transcription	Fetal Heart	heart
2	chr18:11876800-11902600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:11877000-11902400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr18:11878200-11902400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr18:11880000-11907600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr18:11881600-11898400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr18:11881800-11906200	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr18:11882400-11907000	Weak transcription	Small Intestine	intestine
9	chr18:11883400-11897000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr18:11883600-11896800	Strong transcription	Fetal Intestine Small	intestine
11	chr18:11883600-11907000	Weak transcription	NH-A	brain
12	chr18:11883800-11898400	Strong transcription	Fetal Stomach	stomach
13	chr18:11884000-11897000	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr18:11884000-11897200	Strong transcription	Fetal Muscle Trunk	muscle
15	chr18:11884000-11898200	Strong transcription	Fetal Muscle Leg	muscle
16	chr18:11884000-11898800	Strong transcription	Thymus	Thymus
17	chr18:11884000-11899800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr18:11884000-11906200	Strong transcription	Fetal Thymus	thymus
19	chr18:11884200-11897000	Strong transcription	Dnd41	blood
20	chr18:11885000-11905400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr18:11885400-11907000	Weak transcription	HMEC	breast
22	chr18:11885600-11905800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr18:11885600-11907400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr18:11886600-11903200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr18:11886600-11906200	Weak transcription	Fetal Kidney	kidney
26	chr18:11886800-11902200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr18:11886800-11902400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr18:11887000-11902200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr18:11887200-11902600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr18:11887200-11902800	Weak transcription	HSMMtube	muscle
31	chr18:11888000-11905600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr18:11888000-11907200	Weak transcription	HSMM	muscle
33	chr18:11888200-11907200	Weak transcription	Stomach Mucosa	stomach
34	chr18:11888400-11901800	Weak transcription	Gastric	stomach
35	chr18:11888600-11898800	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr18:11888600-11902600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr18:11888600-11905400	Weak transcription	A549	lung
38	chr18:11888800-11902400	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr18:11889400-11905800	Weak transcription	HepG2	liver
40	chr18:11889400-11907000	Weak transcription	NHEK	skin
41	chr18:11889600-11896400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr18:11889600-11897600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr18:11889600-11907000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr18:11890000-11902200	Weak transcription	Aorta	Aorta
45	chr18:11890000-11902200	Weak transcription	Pancreas	Pancrea
46	chr18:11890800-11902000	Weak transcription	Esophagus	oesophagus
47	chr18:11890800-11907000	Weak transcription	Psoas Muscle	Psoas
48	chr18:11890800-11907200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr18:11891000-11896400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr18:11891000-11896400	Weak transcription	Brain Germinal Matrix	brain

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