Variant report

Variant	rs723576
Chromosome Location	chr13:96204091-96204092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs3759449	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3759450	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3759451	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4773914	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4773915	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4773917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6492810	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs723575	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7322348	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9302080	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9302081	0.84[LWK][hapmap];0.86[YRI][hapmap]
rs9525023	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs723576	HSS00172087	cis	multi-tissue	Pritchard

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96194600-96204200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:96194600-96204200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr13:96200400-96204800	Weak transcription	A549	lung
4	chr13:96201000-96204200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:96201600-96204400	Weak transcription	Spleen	Spleen
6	chr13:96203400-96204200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr13:96203400-96204400	Enhancers	Pancreas	Pancrea
8	chr13:96203800-96204400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
9	chr13:96204000-96204200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr13:96204000-96204200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
11	chr13:96204000-96204200	Enhancers	Primary hematopoietic stem cells	blood
12	chr13:96204000-96204400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
13	chr13:96204000-96204400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:96204000-96204800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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