Variant report

Variant	rs9302081
Chromosome Location	chr13:96208087-96208088
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11070136	0.96[CEU][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11070138	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11617959	0.82[EUR][1000 genomes]
rs11841022	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11842014	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1325774	0.92[CEU][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17268561	0.92[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2031540	0.96[CEU][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35588279	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4077046	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs723576	0.84[LWK][hapmap];0.86[YRI][hapmap]
rs7319952	0.96[CEU][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7321014	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7325180	0.92[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7328652	0.92[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7330801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7999322	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9561900	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9302081	UGGT2	cis	parietal	SCAN
rs9302081	CLDN10	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96205600-96210400	Weak transcription	A549	lung
2	chr13:96206200-96209800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:96206600-96211200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:96206600-96231000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:96206800-96208600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr13:96206800-96230200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:96207000-96208800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:96207000-96216800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr13:96207200-96208800	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr13:96207200-96211000	Enhancers	Pancreas	Pancrea
11	chr13:96207200-96216600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr13:96207800-96208400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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