Variant report

Variant	rs7999322
Chromosome Location	chr13:96236616-96236617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11070136	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070138	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11617959	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11841022	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11842014	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1325774	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17268561	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2031540	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35588279	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4077046	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7319952	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321014	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7325180	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7328652	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330801	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9302081	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96223000-96239400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr13:96224200-96254200	Weak transcription	Brain Hippocampus Middle	brain
3	chr13:96224400-96239200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr13:96224400-96248000	Weak transcription	Esophagus	oesophagus
5	chr13:96225800-96239200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:96227000-96239400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:96227200-96246400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:96227600-96246000	Strong transcription	Osteobl	bone
9	chr13:96227800-96246400	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:96227800-96253600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr13:96228200-96246400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:96228600-96246200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:96228600-96246400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr13:96228600-96246400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr13:96228600-96246600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr13:96228800-96243200	Strong transcription	NH-A	brain
17	chr13:96228800-96246600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:96229000-96240200	Strong transcription	Fetal Muscle Leg	muscle
19	chr13:96229000-96243200	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr13:96229000-96243200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr13:96229000-96256200	Weak transcription	Gastric	stomach
22	chr13:96229200-96243200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
23	chr13:96229400-96237000	Weak transcription	Colon Smooth Muscle	Colon
24	chr13:96229400-96237200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr13:96229400-96243400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr13:96229600-96237000	Weak transcription	Fetal Brain Male	brain
27	chr13:96229600-96237400	Weak transcription	Brain Angular Gyrus	brain
28	chr13:96229600-96253600	Weak transcription	Adipose Nuclei	Adipose
29	chr13:96229600-96256000	Weak transcription	Right Ventricle	heart
30	chr13:96229800-96246200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr13:96230000-96237000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr13:96230000-96237800	Weak transcription	Fetal Intestine Large	intestine
33	chr13:96230000-96246400	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr13:96230200-96237000	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr13:96230200-96258200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr13:96230600-96237800	Strong transcription	Fetal Brain Female	brain
37	chr13:96230600-96242800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr13:96230600-96243200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr13:96230600-96243800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr13:96230800-96238200	Strong transcription	Brain Germinal Matrix	brain
41	chr13:96230800-96240000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr13:96231000-96240200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr13:96231000-96246400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr13:96231200-96240800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr13:96231400-96243400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr13:96231600-96239200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr13:96231600-96239200	Weak transcription	Pancreas	Pancrea
48	chr13:96231600-96260000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr13:96231800-96256800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr13:96232000-96239400	Weak transcription	Fetal Heart	heart

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