Variant report

Variant	rs7328652
Chromosome Location	chr13:96253315-96253316
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11070136	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11070138	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11617959	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11841022	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11842014	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1325774	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17268561	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2031540	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35588279	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4077046	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7319952	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321014	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7325180	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7330801	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7999322	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302081	0.92[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9561900	0.92[CEU][hapmap]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96224200-96254200	Weak transcription	Brain Hippocampus Middle	brain
2	chr13:96227800-96253600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:96229000-96256200	Weak transcription	Gastric	stomach
4	chr13:96229600-96253600	Weak transcription	Adipose Nuclei	Adipose
5	chr13:96229600-96256000	Weak transcription	Right Ventricle	heart
6	chr13:96230200-96258200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr13:96231600-96260000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr13:96231800-96256800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr13:96232200-96272800	Weak transcription	Brain Substantia Nigra	brain
10	chr13:96235400-96253400	Weak transcription	Left Ventricle	heart
11	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr13:96238000-96256400	Weak transcription	Placenta	Placenta
13	chr13:96238200-96261000	Weak transcription	Spleen	Spleen
14	chr13:96239800-96259800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr13:96240000-96253600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr13:96240000-96261200	Weak transcription	Colon Smooth Muscle	Colon
17	chr13:96240000-96272800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr13:96240000-96273000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr13:96240200-96253400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr13:96240200-96255800	Weak transcription	Fetal Intestine Large	intestine
21	chr13:96240200-96256000	Weak transcription	Fetal Intestine Small	intestine
22	chr13:96240200-96256200	Weak transcription	Aorta	Aorta
23	chr13:96241200-96260800	Weak transcription	Fetal Heart	heart
24	chr13:96242200-96272600	Weak transcription	Brain Angular Gyrus	brain
25	chr13:96243000-96253600	Weak transcription	HSMMtube	muscle
26	chr13:96243000-96253800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr13:96243200-96253400	Weak transcription	HUVEC	blood vessel
28	chr13:96243200-96256200	Weak transcription	Fetal Brain Male	brain
29	chr13:96245400-96254400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr13:96246000-96254200	Weak transcription	NHDF-Ad	bronchial
31	chr13:96246400-96253600	Weak transcription	A549	lung
32	chr13:96246400-96254200	Weak transcription	Fetal Lung	lung
33	chr13:96246400-96278600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr13:96247200-96259600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr13:96247200-96267000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr13:96247800-96255000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr13:96247800-96256000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr13:96247800-96261200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr13:96247800-96293600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr13:96248000-96256200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr13:96248000-96276600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr13:96248200-96256000	Weak transcription	Esophagus	oesophagus
43	chr13:96249000-96254000	Strong transcription	HSMM	muscle
44	chr13:96249000-96264800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr13:96249400-96272200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr13:96249800-96254400	Weak transcription	HMEC	breast
47	chr13:96249800-96255200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr13:96250000-96253400	Weak transcription	Pancreas	Pancrea
49	chr13:96250200-96253400	Weak transcription	Stomach Smooth Muscle	stomach
50	chr13:96250400-96253400	Weak transcription	HepG2	liver

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