Variant report

Variant	rs11070136
Chromosome Location	chr13:96239805-96239806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11070138	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11617959	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11841022	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11842014	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1325774	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17268561	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2031540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35588279	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4077046	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7319952	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.94[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7321014	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7325180	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7328652	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7330801	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7999322	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9302081	0.96[CEU][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9561900	0.96[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11070136	CLDN10	cis	cerebellum	SCAN
rs11070136	UGGT2	cis	parietal	SCAN

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96224200-96254200	Weak transcription	Brain Hippocampus Middle	brain
2	chr13:96224400-96248000	Weak transcription	Esophagus	oesophagus
3	chr13:96227200-96246400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr13:96227600-96246000	Strong transcription	Osteobl	bone
5	chr13:96227800-96246400	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:96227800-96253600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr13:96228200-96246400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr13:96228600-96246200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:96228600-96246400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:96228600-96246400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr13:96228600-96246600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr13:96228800-96243200	Strong transcription	NH-A	brain
13	chr13:96228800-96246600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:96229000-96240200	Strong transcription	Fetal Muscle Leg	muscle
15	chr13:96229000-96243200	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr13:96229000-96243200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr13:96229000-96256200	Weak transcription	Gastric	stomach
18	chr13:96229200-96243200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
19	chr13:96229400-96243400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr13:96229600-96253600	Weak transcription	Adipose Nuclei	Adipose
21	chr13:96229600-96256000	Weak transcription	Right Ventricle	heart
22	chr13:96229800-96246200	Strong transcription	Fetal Muscle Trunk	muscle
23	chr13:96230000-96246400	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr13:96230200-96258200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr13:96230600-96242800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr13:96230600-96243200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr13:96230600-96243800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr13:96230800-96240000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr13:96231000-96240200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr13:96231000-96246400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr13:96231200-96240800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr13:96231400-96243400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr13:96231600-96260000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr13:96231800-96256800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr13:96232200-96272800	Weak transcription	Brain Substantia Nigra	brain
36	chr13:96233400-96243200	Strong transcription	HUVEC	blood vessel
37	chr13:96233800-96240200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr13:96234400-96240600	Strong transcription	Fetal Stomach	stomach
39	chr13:96235400-96253400	Weak transcription	Left Ventricle	heart
40	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr13:96236400-96240000	Strong transcription	H9 Cell Line	embryonic stem cell
42	chr13:96236600-96243000	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr13:96236600-96243000	Strong transcription	HSMMtube	muscle
44	chr13:96236800-96240000	Strong transcription	HMEC	breast
45	chr13:96236800-96240200	Strong transcription	Fetal Lung	lung
46	chr13:96236800-96240600	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr13:96236800-96243000	Strong transcription	Stomach Smooth Muscle	stomach
48	chr13:96236800-96243200	Strong transcription	NHDF-Ad	bronchial
49	chr13:96236800-96246200	Strong transcription	HSMM	muscle
50	chr13:96237000-96243200	Strong transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links