Variant report

Variant	rs35588279
Chromosome Location	chr13:96263456-96263457
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96256070..96258661-chr13:96261703..96264658,2	K562	blood:
2	chr13:96255180..96257718-chr13:96261326..96264048,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11070136	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11070138	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11617959	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11841022	0.82[EUR][1000 genomes]
rs11842014	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1325774	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17268561	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2031540	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4077046	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7319952	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7321014	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7325180	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7328652	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7330801	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7999322	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9302081	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900934	chr13:96255706-96327574	Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96232200-96272800	Weak transcription	Brain Substantia Nigra	brain
2	chr13:96235600-96284200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr13:96240000-96272800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr13:96240000-96273000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr13:96242200-96272600	Weak transcription	Brain Angular Gyrus	brain
6	chr13:96246400-96278600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr13:96247200-96267000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:96247800-96293600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr13:96248000-96276600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:96249000-96264800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr13:96249400-96272200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr13:96251400-96294400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr13:96253400-96264800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr13:96254200-96265000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr13:96255000-96273000	Weak transcription	Brain Hippocampus Middle	brain
16	chr13:96256400-96295200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr13:96256800-96270200	Weak transcription	Aorta	Aorta
18	chr13:96256800-96273000	Weak transcription	Gastric	stomach
19	chr13:96256800-96273000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr13:96256800-96294200	Weak transcription	Placenta	Placenta
21	chr13:96257000-96265800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr13:96257000-96267800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr13:96257000-96268000	Weak transcription	Fetal Intestine Large	intestine
24	chr13:96257000-96268400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr13:96257000-96269400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr13:96258600-96268400	Weak transcription	Fetal Intestine Small	intestine
27	chr13:96258800-96273000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:96259800-96267400	Weak transcription	Stomach Mucosa	stomach
29	chr13:96260000-96277000	Strong transcription	Cortex derived primary cultured neurospheres	brain
30	chr13:96260200-96264800	Strong transcription	HepG2	liver
31	chr13:96260200-96279000	Weak transcription	Liver	Liver
32	chr13:96260200-96293400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr13:96260400-96265000	Strong transcription	HUES6 Cell Line	embryonic stem cell
34	chr13:96260400-96270200	Weak transcription	HMEC	breast
35	chr13:96260400-96272600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr13:96260600-96266800	Strong transcription	NHDF-Ad	bronchial
37	chr13:96260600-96279200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr13:96260800-96264800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr13:96260800-96273000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr13:96260800-96277000	Strong transcription	Fetal Muscle Trunk	muscle
41	chr13:96261000-96264400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr13:96261000-96264800	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr13:96261000-96266600	Strong transcription	NH-A	brain
44	chr13:96261000-96277000	Strong transcription	Fetal Stomach	stomach
45	chr13:96261000-96277200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr13:96261200-96264600	Strong transcription	Osteobl	bone
47	chr13:96261200-96270600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr13:96261200-96288400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr13:96261400-96267200	Weak transcription	Pancreas	Pancrea
50	chr13:96261400-96267800	Weak transcription	NHLF	lung

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