Variant report

Variant	rs7325180
Chromosome Location	chr13:96228460-96228461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:96227070..96229624-chr13:96232752..96234475,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11070136	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11070138	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11617959	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11841022	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11842014	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1325774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17268561	0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2031540	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35588279	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4077046	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7319952	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7321014	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7328652	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7330801	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7999322	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9302081	0.92[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9561900	0.92[CEU][hapmap]

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96206600-96231000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:96206800-96230200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:96208600-96230000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:96209200-96229000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr13:96210400-96229800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:96212400-96231000	Weak transcription	Fetal Kidney	kidney
7	chr13:96217000-96231200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr13:96217200-96228800	Weak transcription	NH-A	brain
9	chr13:96217200-96229400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr13:96217800-96231400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr13:96220000-96229800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr13:96221400-96228800	Weak transcription	HSMMtube	muscle
13	chr13:96221400-96229200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr13:96222600-96231800	Weak transcription	Placenta	Placenta
15	chr13:96222800-96231000	Weak transcription	A549	lung
16	chr13:96223000-96239400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr13:96223800-96234400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr13:96224200-96254200	Weak transcription	Brain Hippocampus Middle	brain
19	chr13:96224400-96231000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr13:96224400-96239200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr13:96224400-96248000	Weak transcription	Esophagus	oesophagus
22	chr13:96224800-96230600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr13:96225000-96228600	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr13:96225000-96228600	Weak transcription	NHLF	lung
25	chr13:96225200-96228600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr13:96225200-96230600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr13:96225200-96230800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:96225200-96234200	Weak transcription	Brain Anterior Caudate	brain
29	chr13:96225400-96228800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr13:96225400-96230600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr13:96225600-96229000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr13:96225600-96233800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr13:96225800-96228600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr13:96225800-96239200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr13:96226000-96229000	Weak transcription	HMEC	breast
36	chr13:96226000-96229200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr13:96226000-96230800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr13:96226000-96231200	Weak transcription	HUVEC	blood vessel
39	chr13:96226200-96228600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr13:96226400-96231000	Weak transcription	Fetal Lung	lung
41	chr13:96226600-96228800	Weak transcription	Fetal Stomach	stomach
42	chr13:96226600-96230800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr13:96226800-96231000	Weak transcription	Ovary	ovary
44	chr13:96227000-96228600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr13:96227000-96231000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr13:96227000-96239400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr13:96227200-96246400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr13:96227400-96229200	Weak transcription	HSMM	muscle
49	chr13:96227400-96234600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr13:96227600-96229400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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