Variant report

Variant	rs11841022
Chromosome Location	chr13:96210593-96210594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11070136	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11070138	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11617959	0.82[EUR][1000 genomes]
rs11842014	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1325774	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17268561	0.81[EUR][1000 genomes]
rs2031540	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35588279	0.82[EUR][1000 genomes]
rs4077046	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7319952	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7321014	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7325180	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7328652	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7330801	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7999322	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9302081	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96206600-96211200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:96206600-96231000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:96206800-96230200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:96207000-96216800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr13:96207200-96211000	Enhancers	Pancreas	Pancrea
6	chr13:96207200-96216600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr13:96208400-96211400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr13:96208600-96230000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr13:96208800-96210600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr13:96209200-96229000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr13:96209600-96211000	Bivalent Enhancer	HepG2	liver
12	chr13:96209600-96212400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr13:96209800-96210600	Enhancers	Fetal Lung	lung
14	chr13:96210400-96211200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr13:96210400-96212000	Enhancers	A549	lung
16	chr13:96210400-96229800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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