Variant report

Variant	rs723581
Chromosome Location	chr7:80563385-80563386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10227876	0.84[ASN][1000 genomes]
rs10231831	0.82[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10232696	0.84[ASN][1000 genomes]
rs10236574	0.84[ASN][1000 genomes]
rs10276784	0.84[ASN][1000 genomes]
rs11975194	0.84[ASN][1000 genomes]
rs12534660	0.89[ASN][1000 genomes]
rs17230494	0.85[ASN][1000 genomes]
rs2190239	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28674095	0.85[ASN][1000 genomes]
rs6467464	0.81[ASN][1000 genomes]
rs6969340	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6970479	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6976815	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6978489	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888548	chr7:80553950-80587737	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv888549	chr7:80553950-80652059	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80548400-80570000	Weak transcription	Gastric	stomach
2	chr7:80549200-80565000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:80559600-80563400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:80559600-80569400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:80562000-80563800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:80562400-80563400	Weak transcription	HMEC	breast
7	chr7:80562400-80563400	Weak transcription	Osteobl	bone
8	chr7:80562400-80569400	Weak transcription	NHEK	skin
9	chr7:80563000-80563600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr7:80563000-80564200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr7:80563200-80564200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:80563200-80564200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links