Variant report

Variant	rs7237790
Chromosome Location	chr18:13416108-13416109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13414771..13422336-chr18:13423598..13429439,14	MCF-7	breast:
2	chr18:13408519..13410300-chr18:13414486..13416539,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267690	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2045089	1.00[CHB][hapmap]
rs8092407	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13383600-13421200	Weak transcription	Gastric	stomach
2	chr18:13385600-13420800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr18:13388800-13416800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr18:13390400-13425600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:13395000-13426600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr18:13399000-13418000	Weak transcription	Pancreas	Pancrea
7	chr18:13401400-13416200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr18:13403400-13426400	Weak transcription	Brain Hippocampus Middle	brain
9	chr18:13403800-13416200	Weak transcription	Colon Smooth Muscle	Colon
10	chr18:13407600-13427400	Weak transcription	Brain Substantia Nigra	brain
11	chr18:13410800-13417000	Weak transcription	Stomach Mucosa	stomach
12	chr18:13411800-13422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr18:13412200-13416200	Weak transcription	Fetal Stomach	stomach
14	chr18:13412600-13417000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr18:13413200-13417000	Weak transcription	Brain Angular Gyrus	brain
16	chr18:13413200-13418000	Weak transcription	Fetal Intestine Small	intestine
17	chr18:13413200-13418200	Weak transcription	Esophagus	oesophagus
18	chr18:13413200-13421000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr18:13413200-13421400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr18:13413200-13424400	Weak transcription	Fetal Brain Female	brain
21	chr18:13414000-13417200	Enhancers	Thymus	Thymus
22	chr18:13414200-13416200	Genic enhancers	Fetal Thymus	thymus
23	chr18:13414200-13416200	Enhancers	Right Atrium	heart
24	chr18:13414200-13416200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr18:13414200-13416600	Enhancers	Duodenum Mucosa	Duodenum
26	chr18:13414200-13417200	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr18:13414200-13418600	Enhancers	Right Ventricle	heart
28	chr18:13414200-13418800	Enhancers	Left Ventricle	heart
29	chr18:13414600-13416200	Enhancers	Lung	lung
30	chr18:13414800-13416200	Enhancers	Colonic Mucosa	Colon
31	chr18:13414800-13416600	Enhancers	Primary hematopoietic stem cells	blood
32	chr18:13414800-13417200	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr18:13414800-13420800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr18:13415000-13417400	Enhancers	Dnd41	blood
35	chr18:13415000-13422400	Enhancers	Fetal Heart	heart
36	chr18:13415200-13417200	Enhancers	Brain Anterior Caudate	brain
37	chr18:13415200-13418000	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr18:13415400-13416200	Enhancers	Fetal Muscle Leg	muscle
39	chr18:13415400-13416400	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr18:13415400-13417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr18:13415400-13417200	Enhancers	Small Intestine	intestine
42	chr18:13415400-13418600	Enhancers	Psoas Muscle	Psoas
43	chr18:13415600-13416600	Enhancers	Primary T cells fromperipheralblood	blood
44	chr18:13415600-13417000	Enhancers	Fetal Intestine Large	intestine
45	chr18:13415600-13417200	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr18:13415600-13417200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr18:13415600-13417200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr18:13415600-13417400	Enhancers	Primary T cells from cord blood	blood
49	chr18:13415600-13417600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr18:13415600-13417800	Enhancers	Liver	Liver

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