Variant report

Variant	rs8092407
Chromosome Location	chr18:13416587-13416588
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13414771..13422336-chr18:13423598..13429439,14	MCF-7	breast:

Variant related genes	Relation type
ENSG00000267690	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2045089	1.00[CHB][hapmap]
rs7237790	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531246	chr18:13298774-14082028	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13383600-13421200	Weak transcription	Gastric	stomach
2	chr18:13385600-13420800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr18:13388800-13416800	Weak transcription	Rectal Smooth Muscle	rectum
4	chr18:13390400-13425600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:13395000-13426600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr18:13399000-13418000	Weak transcription	Pancreas	Pancrea
7	chr18:13403400-13426400	Weak transcription	Brain Hippocampus Middle	brain
8	chr18:13407600-13427400	Weak transcription	Brain Substantia Nigra	brain
9	chr18:13410800-13417000	Weak transcription	Stomach Mucosa	stomach
10	chr18:13411800-13422000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:13412600-13417000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr18:13413200-13417000	Weak transcription	Brain Angular Gyrus	brain
13	chr18:13413200-13418000	Weak transcription	Fetal Intestine Small	intestine
14	chr18:13413200-13418200	Weak transcription	Esophagus	oesophagus
15	chr18:13413200-13421000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr18:13413200-13421400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr18:13413200-13424400	Weak transcription	Fetal Brain Female	brain
18	chr18:13414000-13417200	Enhancers	Thymus	Thymus
19	chr18:13414200-13416600	Enhancers	Duodenum Mucosa	Duodenum
20	chr18:13414200-13417200	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr18:13414200-13418600	Enhancers	Right Ventricle	heart
22	chr18:13414200-13418800	Enhancers	Left Ventricle	heart
23	chr18:13414800-13416600	Enhancers	Primary hematopoietic stem cells	blood
24	chr18:13414800-13417200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr18:13414800-13420800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr18:13415000-13417400	Enhancers	Dnd41	blood
27	chr18:13415000-13422400	Enhancers	Fetal Heart	heart
28	chr18:13415200-13417200	Enhancers	Brain Anterior Caudate	brain
29	chr18:13415200-13418000	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr18:13415400-13417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr18:13415400-13417200	Enhancers	Small Intestine	intestine
32	chr18:13415400-13418600	Enhancers	Psoas Muscle	Psoas
33	chr18:13415600-13416600	Enhancers	Primary T cells fromperipheralblood	blood
34	chr18:13415600-13417000	Enhancers	Fetal Intestine Large	intestine
35	chr18:13415600-13417200	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr18:13415600-13417200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr18:13415600-13417200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr18:13415600-13417400	Enhancers	Primary T cells from cord blood	blood
39	chr18:13415600-13417600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr18:13415600-13417800	Enhancers	Liver	Liver
41	chr18:13415800-13416600	Enhancers	Primary monocytes fromperipheralblood	blood
42	chr18:13415800-13416600	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr18:13415800-13416600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr18:13415800-13417200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
45	chr18:13415800-13418800	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr18:13416000-13417000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr18:13416000-13417200	Enhancers	HUVEC	blood vessel
48	chr18:13416000-13417400	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr18:13416000-13417600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr18:13416000-13418600	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links