Variant report

Variant	rs7243533
Chromosome Location	chr18:25637555-25637556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11564286	1.00[AMR][1000 genomes]
rs11564309	1.00[AMR][1000 genomes]
rs11564320	1.00[AMR][1000 genomes]
rs11564399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11564411	1.00[AMR][1000 genomes]
rs17493084	1.00[AMR][1000 genomes]
rs17493542	1.00[AMR][1000 genomes]
rs17493576	1.00[AMR][1000 genomes]
rs17493926	1.00[AMR][1000 genomes]
rs17494276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17494388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17521540	1.00[AMR][1000 genomes]
rs17522464	1.00[AMR][1000 genomes]
rs1899644	1.00[AMR][1000 genomes]
rs1899645	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25625800-25643400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:25625800-25650400	Weak transcription	Right Atrium	heart
3	chr18:25626000-25643200	Weak transcription	HUVEC	blood vessel
4	chr18:25627600-25645600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr18:25629400-25643000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:25630000-25643200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr18:25630000-25643200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr18:25630200-25642400	Weak transcription	HSMM	muscle
9	chr18:25630400-25637600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr18:25630800-25641200	Weak transcription	Left Ventricle	heart
11	chr18:25631600-25639200	Weak transcription	Osteobl	bone
12	chr18:25633000-25640400	Weak transcription	NH-A	brain
13	chr18:25635400-25639400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr18:25636000-25638200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr18:25636400-25642600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr18:25636600-25638200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr18:25636600-25643400	Weak transcription	HepG2	liver
18	chr18:25637000-25639000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr18:25637400-25637800	Enhancers	Right Ventricle	heart
20	chr18:25637400-25640200	Weak transcription	Fetal Heart	heart

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