Variant report

Variant	rs17493926
Chromosome Location	chr18:25615549-25615550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11564286	1.00[AMR][1000 genomes]
rs11564309	1.00[AMR][1000 genomes]
rs11564318	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs11564320	1.00[AMR][1000 genomes]
rs11564399	1.00[AMR][1000 genomes]
rs11564411	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1228420	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17468310	0.83[YRI][hapmap]
rs17493084	1.00[AMR][1000 genomes]
rs17493423	1.00[CEU][hapmap]
rs17493542	1.00[AMR][1000 genomes]
rs17493576	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17493744	0.89[EUR][1000 genomes]
rs17494136	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17494276	1.00[AMR][1000 genomes]
rs17494388	1.00[AMR][1000 genomes]
rs17521540	1.00[AMR][1000 genomes]
rs17522229	1.00[CEU][hapmap]
rs17522285	1.00[CEU][hapmap]
rs17522464	1.00[AMR][1000 genomes]
rs1899644	1.00[AMR][1000 genomes]
rs1899645	1.00[AMR][1000 genomes]
rs488190	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs525524	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs635726	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7243533	1.00[AMR][1000 genomes]
rs8090262	1.00[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25583800-25621400	Weak transcription	Right Ventricle	heart
2	chr18:25600000-25619000	Weak transcription	HSMM	muscle
3	chr18:25609800-25621600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr18:25611400-25615800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr18:25612000-25615800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr18:25612400-25619000	Weak transcription	Brain Germinal Matrix	brain
7	chr18:25612600-25616600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr18:25612800-25616400	Weak transcription	Osteobl	bone
9	chr18:25612800-25618200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:25612800-25618200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:25612800-25619000	Weak transcription	A549	lung
12	chr18:25613000-25616400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr18:25613000-25617800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr18:25613400-25617600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr18:25614000-25615800	Weak transcription	Brain Hippocampus Middle	brain
16	chr18:25614000-25618000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr18:25614200-25618200	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr18:25614400-25618000	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr18:25614600-25616600	Enhancers	NH-A	brain
20	chr18:25614600-25617400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr18:25614800-25615800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr18:25614800-25616200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr18:25614800-25618000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr18:25615000-25616800	Weak transcription	Brain Angular Gyrus	brain
25	chr18:25615000-25617000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr18:25615000-25617000	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr18:25615200-25615600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr18:25615200-25616200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr18:25615200-25617000	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr18:25615200-25617800	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr18:25615200-25618400	Enhancers	Fetal Heart	heart
32	chr18:25615200-25624600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr18:25615400-25615600	Enhancers	Brain Anterior Caudate	brain
34	chr18:25615400-25616400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr18:25615400-25616600	Weak transcription	Brain Substantia Nigra	brain

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