Variant report

Variant	rs11564318
Chromosome Location	chr18:25604177-25604178
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11564411	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1228420	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17493423	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17493576	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17493744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17493926	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17494136	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17522229	1.00[CEU][hapmap]
rs17522236	0.88[EUR][1000 genomes]
rs17522285	1.00[CEU][hapmap]
rs17522436	0.82[EUR][1000 genomes]
rs488190	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs525524	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs635726	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs8090262	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1066192	chr18:25454413-25606736	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv543669	chr18:25454413-25606736	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25583800-25621400	Weak transcription	Right Ventricle	heart
2	chr18:25589800-25611000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr18:25592400-25611000	Weak transcription	Brain Germinal Matrix	brain
4	chr18:25593600-25612000	Weak transcription	HUVEC	blood vessel
5	chr18:25593800-25612600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr18:25595200-25615000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr18:25599200-25612000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr18:25599200-25612000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr18:25599600-25610600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr18:25599800-25607400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr18:25600000-25611400	Weak transcription	Osteobl	bone
12	chr18:25600000-25611600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr18:25600000-25619000	Weak transcription	HSMM	muscle
14	chr18:25600800-25611800	Weak transcription	A549	lung
15	chr18:25602800-25606800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr18:25603000-25604200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr18:25603600-25604400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr18:25603800-25605200	Strong transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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