Variant report

Variant	rs635726
Chromosome Location	chr18:25639899-25639900
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:25634620..25637492-chr18:25639243..25641008,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11564318	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11564411	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1228420	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17493423	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17493576	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17493744	1.00[EUR][1000 genomes]
rs17493926	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17494136	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17522229	1.00[CEU][hapmap]
rs17522236	0.88[EUR][1000 genomes]
rs17522285	1.00[CEU][hapmap]
rs17522436	0.82[EUR][1000 genomes]
rs488190	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs525524	1.00[CEU][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8090262	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv833605	chr18:25467096-25643447	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25625800-25643400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:25625800-25650400	Weak transcription	Right Atrium	heart
3	chr18:25626000-25643200	Weak transcription	HUVEC	blood vessel
4	chr18:25627600-25645600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr18:25629400-25643000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:25630000-25643200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr18:25630000-25643200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr18:25630200-25642400	Weak transcription	HSMM	muscle
9	chr18:25630800-25641200	Weak transcription	Left Ventricle	heart
10	chr18:25633000-25640400	Weak transcription	NH-A	brain
11	chr18:25636400-25642600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr18:25636600-25643400	Weak transcription	HepG2	liver
13	chr18:25637400-25640200	Weak transcription	Fetal Heart	heart
14	chr18:25637600-25640200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr18:25638200-25641200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr18:25638400-25643600	Weak transcription	Right Ventricle	heart
17	chr18:25639000-25641000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr18:25639200-25640200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr18:25639200-25640600	Enhancers	Osteobl	bone
20	chr18:25639200-25642800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr18:25639600-25640000	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr18:25639600-25642800	Enhancers	Muscle Satellite Cultured Cells	--

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