Variant report

Variant	rs72501734
Chromosome Location	chr6:150390149-150390150
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150378184..150381057-chr6:150388223..150390154,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17079222	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2152102	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4869801	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4869821	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57468965	1.00[EUR][1000 genomes]
rs59979907	1.00[EUR][1000 genomes]
rs60327211	1.00[EUR][1000 genomes]
rs60908559	0.87[EUR][1000 genomes]
rs6557239	1.00[EUR][1000 genomes]
rs6557240	1.00[EUR][1000 genomes]
rs6557241	1.00[EUR][1000 genomes]
rs6916695	1.00[EUR][1000 genomes]
rs721419	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72501731	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73779772	1.00[EUR][1000 genomes]
rs7742735	1.00[EUR][1000 genomes]
rs7747476	1.00[EUR][1000 genomes]
rs7757826	1.00[EUR][1000 genomes]
rs7765782	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3323918	chr6:150327978-150392099	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv886767	chr6:150335407-150400488	Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1026236	chr6:150360882-150408946	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150389200-150390200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:150389200-150390600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:150389200-150390800	Flanking Active TSS	Stomach Smooth Muscle	stomach
4	chr6:150389200-150391000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
5	chr6:150389400-150390800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
6	chr6:150389400-150390800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
7	chr6:150389400-150390800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:150389400-150390800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:150389400-150390800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr6:150389400-150390800	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr6:150389400-150390800	Active TSS	Brain Cingulate Gyrus	brain
12	chr6:150389400-150390800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:150389400-150390800	Active TSS	HSMMtube	muscle
14	chr6:150389400-150390800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
15	chr6:150389400-150390800	Active TSS	NHDF-Ad	bronchial
16	chr6:150389400-150391000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr6:150389400-150391000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr6:150389400-150391000	Active TSS	Brain Anterior Caudate	brain
19	chr6:150389400-150391000	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr6:150389400-150391000	Active TSS	Rectal Smooth Muscle	rectum
21	chr6:150389400-150391200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
22	chr6:150389400-150391200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr6:150389600-150390200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
24	chr6:150389600-150390200	Active TSS	Aorta	Aorta
25	chr6:150389600-150390200	Flanking Active TSS	Liver	Liver
26	chr6:150389600-150390200	Flanking Active TSS	Placenta	Placenta
27	chr6:150389600-150390200	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
28	chr6:150389600-150390200	Flanking Bivalent TSS/Enh	HepG2	liver
29	chr6:150389600-150390400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr6:150389600-150390400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
31	chr6:150389600-150390400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
32	chr6:150389600-150390400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:150389600-150390400	Active TSS	Sigmoid Colon	Sigmoid Colon
34	chr6:150389600-150390600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr6:150389600-150390600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:150389600-150390600	Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr6:150389600-150390600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
38	chr6:150389600-150390600	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr6:150389600-150390800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr6:150389600-150390800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr6:150389600-150390800	Active TSS	Primary T cells from cord blood	blood
42	chr6:150389600-150390800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr6:150389600-150390800	Active TSS	Muscle Satellite Cultured Cells	--
44	chr6:150389600-150390800	Active TSS	Brain Hippocampus Middle	brain
45	chr6:150389600-150390800	Active TSS	Colon Smooth Muscle	Colon
46	chr6:150389600-150390800	Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr6:150389600-150390800	Active TSS	Fetal Lung	lung
48	chr6:150389600-150390800	Active TSS	Gastric	stomach
49	chr6:150389600-150390800	Active TSS	Left Ventricle	heart
50	chr6:150389600-150390800	Active TSS	A549	lung

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