Variant report

Variant	rs7757826
Chromosome Location	chr6:150358794-150358795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr6:150358515-150358869	H1-hESC	embryonic stem cell:	n/a	n/a
2	SIN3A	chr6:150358708-150359050	H1-hESC	embryonic stem cell:	n/a	n/a
3	SUZ12	chr6:150358565-150359685	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
PHBP1	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17079222	1.00[EUR][1000 genomes]
rs2152102	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869801	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869821	0.87[EUR][1000 genomes]
rs57468965	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59979907	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60327211	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60908559	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6557239	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6557240	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6557241	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6916695	1.00[CEU][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs721419	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72501734	1.00[EUR][1000 genomes]
rs73779772	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7742735	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747476	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765782	1.00[CEU][hapmap];0.92[MEX][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv7375	chr6:150324114-150388625	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3344440	chr6:150324131-150388650	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3323918	chr6:150327978-150392099	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv886766	chr6:150335407-150364009	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv886767	chr6:150335407-150400488	Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv5535	chr6:150339697-150361659	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv886768	chr6:150340035-150366143	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv886769	chr6:150346037-150364009	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150357200-150359000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150357200-150359000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:150358000-150358800	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
4	chr6:150358200-150359200	Bivalent Enhancer	Duodenum Mucosa	Duodenum
5	chr6:150358200-150359400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
6	chr6:150358200-150359800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:150358200-150359800	Bivalent Enhancer	Fetal Brain Male	brain
8	chr6:150358400-150358800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
9	chr6:150358400-150358800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
10	chr6:150358400-150358800	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:150358400-150358800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
12	chr6:150358400-150358800	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:150358400-150358800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:150358400-150358800	Bivalent Enhancer	Brain Anterior Caudate	brain
15	chr6:150358400-150358800	Enhancers	Pancreas	Pancrea
16	chr6:150358400-150359200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
17	chr6:150358400-150359400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
18	chr6:150358400-150359600	Bivalent Enhancer	Fetal Heart	heart
19	chr6:150358400-150359600	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr6:150358400-150359800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
21	chr6:150358400-150359800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
22	chr6:150358400-150360200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
23	chr6:150358600-150358800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
24	chr6:150358600-150358800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
25	chr6:150358600-150358800	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
26	chr6:150358600-150358800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:150358600-150358800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:150358600-150358800	Bivalent Enhancer	Adipose Nuclei	Adipose
29	chr6:150358600-150358800	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
30	chr6:150358600-150358800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
31	chr6:150358600-150358800	Active TSS	Psoas Muscle	Psoas
32	chr6:150358600-150358800	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
33	chr6:150358600-150358800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
34	chr6:150358600-150359000	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:150358600-150359000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:150358600-150359000	Bivalent Enhancer	Fetal Intestine Large	intestine
37	chr6:150358600-150359000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
38	chr6:150358600-150359000	Bivalent Enhancer	HSMMtube	muscle
39	chr6:150358600-150359000	Bivalent/Poised TSS	NHEK	skin
40	chr6:150358600-150359200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:150358600-150359200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:150358600-150359200	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
43	chr6:150358600-150359200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:150358600-150359200	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
45	chr6:150358600-150359200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
46	chr6:150358600-150359200	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
47	chr6:150358600-150359200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
48	chr6:150358600-150359200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
49	chr6:150358600-150359200	Bivalent/Poised TSS	HSMM	muscle
50	chr6:150358600-150359400	Bivalent Enhancer	Colonic Mucosa	Colon

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