Variant report

Variant	rs72556071
Chromosome Location	chr6:133257776-133257777
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17061975	1.00[ASN][1000 genomes]
rs17062020	0.98[ASN][1000 genomes]
rs72556058	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72556059	0.98[ASN][1000 genomes]
rs72556061	0.98[ASN][1000 genomes]
rs72556062	0.98[ASN][1000 genomes]
rs72556064	0.98[ASN][1000 genomes]
rs72556065	0.91[ASN][1000 genomes]
rs72556069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72556081	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72556084	1.00[AFR][1000 genomes]
rs72556085	1.00[AFR][1000 genomes]
rs72556086	1.00[AFR][1000 genomes]
rs72556087	1.00[AFR][1000 genomes]
rs72556089	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133253600-133258800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:133253800-133258400	Weak transcription	Liver	Liver
3	chr6:133254400-133258800	Weak transcription	Fetal Kidney	kidney
4	chr6:133254600-133258600	Weak transcription	Brain Substantia Nigra	brain
5	chr6:133256400-133258200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:133256400-133258400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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