Variant report

Variant	rs17061975
Chromosome Location	chr6:133240019-133240020
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133139023..133140882-chr6:133238687..133240373,2	MCF-7	breast:
2	chr6:133232577..133234235-chr6:133238890..133241749,2	K562	blood:
3	chr6:133234453..133237636-chr6:133237638..133240523,3	MCF-7	breast:
4	chr6:133215054..133218379-chr6:133238674..133241555,3	MCF-7	breast:
5	chr6:133229220..133231011-chr6:133238741..133240933,2	K562	blood:
6	chr6:133232161..133234694-chr6:133238799..133240675,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10457591	0.85[CEU][hapmap]
rs10457593	0.85[CEU][hapmap]
rs10457596	0.85[CEU][hapmap]
rs10484628	0.85[CEU][hapmap]
rs1128998	0.85[CEU][hapmap]
rs11758796	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12190684	0.82[CEU][hapmap]
rs12193474	0.86[CEU][hapmap]
rs12194625	0.85[CEU][hapmap]
rs12194802	0.85[CEU][hapmap]
rs12197430	0.85[CEU][hapmap]
rs12199381	0.85[CEU][hapmap]
rs12204027	0.82[CEU][hapmap]
rs12204693	0.85[CEU][hapmap]
rs12204740	0.85[CEU][hapmap]
rs12204863	0.85[CEU][hapmap]
rs12207011	0.85[CEU][hapmap]
rs12209144	1.00[CEU][hapmap]
rs12211425	0.85[CEU][hapmap]
rs12212934	0.85[CEU][hapmap]
rs12215088	0.85[CEU][hapmap]
rs17062020	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3778173	0.85[CEU][hapmap]
rs62426668	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62426674	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72556058	1.00[ASN][1000 genomes]
rs72556059	0.98[ASN][1000 genomes]
rs72556061	0.98[ASN][1000 genomes]
rs72556062	0.98[ASN][1000 genomes]
rs72556064	0.98[ASN][1000 genomes]
rs72556065	0.91[ASN][1000 genomes]
rs72556069	1.00[ASN][1000 genomes]
rs72556071	1.00[ASN][1000 genomes]
rs72556081	0.95[ASN][1000 genomes]
rs9375919	0.85[CEU][hapmap]
rs9389032	0.85[CEU][hapmap]
rs9389033	0.85[CEU][hapmap]
rs9402452	0.85[CEU][hapmap]
rs9402453	0.85[CEU][hapmap]
rs9402455	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv869855	chr6:133190265-133244259	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17061975	C6orf192	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133234600-133240200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:133234600-133240200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:133234600-133240200	Weak transcription	Psoas Muscle	Psoas
4	chr6:133234600-133240200	Weak transcription	HSMM	muscle
5	chr6:133238000-133240200	Weak transcription	NH-A	brain
6	chr6:133238600-133240200	Enhancers	NHLF	lung
7	chr6:133239000-133240200	Enhancers	Fetal Heart	heart
8	chr6:133239200-133240200	Weak transcription	Fetal Stomach	stomach
9	chr6:133239400-133240200	Enhancers	Fetal Lung	lung
10	chr6:133239400-133240200	Enhancers	Stomach Smooth Muscle	stomach
11	chr6:133239600-133240200	Enhancers	Osteobl	bone
12	chr6:133240000-133240200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:133240000-133240200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:133240000-133240200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:133240000-133240200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:133240000-133240400	Enhancers	Adipose Nuclei	Adipose
17	chr6:133240000-133240400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:133240000-133240600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr6:133240000-133240600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr6:133240000-133241000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr6:133240000-133241000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:133240000-133241200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:133240000-133241200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:133240000-133241400	Enhancers	Cortex derived primary cultured neurospheres	brain

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