Variant report

Variant	rs10457596
Chromosome Location	chr6:133169974-133169975
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133134186..133135888-chr6:133168555..133170762,2	K562	blood:
2	chr6:133140710..133143536-chr6:133169760..133172712,2	K562	blood:
3	chr6:133139605..133142425-chr6:133167716..133170536,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112306	Chromatin interaction

Extended variants
information (count: 69 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10457591	0.85[CEU][hapmap]
rs10457593	0.85[CEU][hapmap]
rs10457595	0.84[EUR][1000 genomes]
rs10484628	0.85[CEU][hapmap]
rs10484629	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1128998	0.85[CEU][hapmap]
rs11962883	0.88[ASN][1000 genomes]
rs11964512	0.83[ASN][1000 genomes]
rs12190684	0.82[CEU][hapmap]
rs12194625	0.85[CEU][hapmap]
rs12194802	0.85[CEU][hapmap]
rs12197430	0.85[CEU][hapmap]
rs12198849	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199381	0.85[CEU][hapmap]
rs12203977	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12204027	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12204693	0.85[CEU][hapmap]
rs12204740	0.85[CEU][hapmap]
rs12204863	0.85[CEU][hapmap]
rs12207011	0.85[CEU][hapmap]
rs12211425	0.85[CEU][hapmap]
rs12211701	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12212934	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12215088	1.00[CEU][hapmap]
rs1467403	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1467404	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3778173	0.85[CEU][hapmap]
rs3813347	0.88[ASN][1000 genomes]
rs56148066	0.86[ASN][1000 genomes]
rs58644652	0.83[AFR][1000 genomes]
rs58832890	0.91[ASN][1000 genomes]
rs61421874	0.91[ASN][1000 genomes]
rs62424539	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62425137	0.84[EUR][1000 genomes]
rs6569847	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6569848	0.83[ASN][1000 genomes]
rs6910639	0.81[ASN][1000 genomes]
rs6912936	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6915168	0.91[ASN][1000 genomes]
rs6934161	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs73554431	0.91[ASN][1000 genomes]
rs7738071	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7738400	1.00[JPT][hapmap]
rs7758703	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7761365	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7765224	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs7769051	0.94[ASN][1000 genomes]
rs7770081	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9321367	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9321371	0.84[ASN][1000 genomes]
rs9375919	0.85[CEU][hapmap]
rs9389032	0.85[CEU][hapmap]
rs9389033	0.85[CEU][hapmap]
rs9399041	0.83[ASN][1000 genomes]
rs9402452	0.85[CEU][hapmap]
rs9402453	0.85[CEU][hapmap]
rs9402455	0.85[CEU][hapmap]
rs9483514	0.86[ASN][1000 genomes]
rs9493435	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9493436	1.00[JPT][hapmap]
rs9493437	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs9493438	0.83[ASN][1000 genomes]
rs9493443	0.91[ASN][1000 genomes]
rs9493444	0.91[ASN][1000 genomes]
rs9493445	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9493446	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9493454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10457596	C6orf192	cis	multi-tissue	Pritchard
rs10457596	C6orf192	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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