Variant report

Variant	rs6912936
Chromosome Location	chr6:133102664-133102665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:133102182..133104847-chr6:133124000..133126674,2	K562	blood:
2	chr6:133100929..133103671-chr6:133142640..133144601,2	K562	blood:
3	chr6:133100638..133103529-chr6:133138140..133140899,2	K562	blood:

Variant related genes	Relation type
ENSG00000200534	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10457591	1.00[CHB][hapmap]
rs10457596	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10484629	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1128998	1.00[CHB][hapmap]
rs11962883	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11964512	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965927	0.86[AFR][1000 genomes]
rs12190684	1.00[CHB][hapmap]
rs12197430	1.00[CHB][hapmap]
rs12198849	0.83[ASN][1000 genomes]
rs12203977	0.82[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12204027	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12211701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1467403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736725	0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs3813347	1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58832890	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59716502	0.86[AFR][1000 genomes]
rs60133731	0.82[AFR][1000 genomes]
rs60631157	0.86[AFR][1000 genomes]
rs61421874	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62424539	0.83[ASN][1000 genomes]
rs6569847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569848	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910639	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6915168	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6926101	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs6934161	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73554431	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7738071	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7738400	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7744961	0.84[AFR][1000 genomes]
rs7758703	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759524	0.93[YRI][hapmap];0.81[AFR][1000 genomes]
rs7761207	0.84[AFR][1000 genomes]
rs7761365	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769051	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7770081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775241	0.92[YRI][hapmap];0.84[AFR][1000 genomes]
rs9321367	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9321371	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9375919	1.00[CHB][hapmap]
rs9389032	1.00[CHB][hapmap]
rs9399041	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402452	1.00[CHB][hapmap]
rs9402453	1.00[CHB][hapmap]
rs9402455	1.00[CHB][hapmap]
rs9493435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493436	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9493437	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493438	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493441	0.84[AFR][1000 genomes]
rs9493443	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493444	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493445	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493446	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493454	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6912936	C6orf192	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133083800-133118200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:133085000-133109000	Weak transcription	GM12878-XiMat	blood
3	chr6:133085000-133114600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:133085000-133119000	Weak transcription	Thymus	Thymus
5	chr6:133085200-133112200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr6:133085200-133119400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:133085400-133114400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:133085600-133118800	Weak transcription	Colon Smooth Muscle	Colon
9	chr6:133085800-133119000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:133086000-133112800	Weak transcription	Hela-S3	cervix
11	chr6:133086000-133113800	Weak transcription	NHEK	skin
12	chr6:133086000-133118800	Weak transcription	Fetal Kidney	kidney
13	chr6:133086200-133107800	Weak transcription	Osteobl	bone
14	chr6:133086400-133110200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:133086600-133103400	Weak transcription	Brain Anterior Caudate	brain
16	chr6:133088200-133111200	Weak transcription	HUVEC	blood vessel
17	chr6:133088600-133114600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr6:133089400-133104400	Weak transcription	Brain Germinal Matrix	brain
19	chr6:133089400-133110400	Weak transcription	Colonic Mucosa	Colon
20	chr6:133089400-133111800	Weak transcription	Lung	lung
21	chr6:133089400-133119400	Weak transcription	Gastric	stomach
22	chr6:133089600-133111400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:133089600-133111400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:133089600-133111800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:133089600-133118800	Weak transcription	Fetal Heart	heart
26	chr6:133089600-133119000	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:133089600-133119200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr6:133089600-133119200	Weak transcription	Right Ventricle	heart
29	chr6:133089600-133119200	Weak transcription	Stomach Mucosa	stomach
30	chr6:133089600-133119400	Weak transcription	Pancreas	Pancrea
31	chr6:133089800-133118200	Weak transcription	Fetal Brain Male	brain
32	chr6:133089800-133118800	Weak transcription	Brain Angular Gyrus	brain
33	chr6:133090000-133118800	Weak transcription	HepG2	liver
34	chr6:133090400-133114200	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr6:133090600-133107800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr6:133091800-133119000	Weak transcription	Psoas Muscle	Psoas
37	chr6:133094000-133110200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:133096800-133104800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:133097000-133104600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:133097400-133108600	Strong transcription	Stomach Smooth Muscle	stomach
41	chr6:133097600-133104800	Strong transcription	Fetal Stomach	stomach
42	chr6:133098000-133103200	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:133098400-133110000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:133098400-133119000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:133098400-133119000	Weak transcription	Brain Substantia Nigra	brain
46	chr6:133098600-133118800	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr6:133098800-133110400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr6:133099000-133106400	Strong transcription	Primary B cells from peripheral blood	blood
49	chr6:133099000-133113000	Strong transcription	Fetal Intestine Large	intestine
50	chr6:133100400-133104600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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