Variant report

Variant	rs60133731
Chromosome Location	chr6:133095818-133095819
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133089126..133091714-chr6:133094253..133096941,4	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1122175	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965927	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34688576	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34934410	1.00[ASN][1000 genomes]
rs35148730	1.00[ASN][1000 genomes]
rs3736725	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756971	1.00[ASN][1000 genomes]
rs41286184	1.00[ASN][1000 genomes]
rs56908272	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57176306	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58949949	0.81[ASN][1000 genomes]
rs59357932	0.91[ASN][1000 genomes]
rs59716502	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59718818	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60177375	0.91[ASN][1000 genomes]
rs60631157	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61310652	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569851	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569852	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905784	1.00[ASN][1000 genomes]
rs6911773	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912936	0.82[AFR][1000 genomes]
rs6924403	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6926101	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6927991	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6928237	1.00[ASN][1000 genomes]
rs6928933	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930549	1.00[ASN][1000 genomes]
rs6930703	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934155	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934190	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547611	0.81[ASN][1000 genomes]
rs73550455	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73554461	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73558375	0.91[ASN][1000 genomes]
rs73558378	0.91[ASN][1000 genomes]
rs73558387	0.91[ASN][1000 genomes]
rs7738256	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738569	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744961	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7747544	1.00[ASN][1000 genomes]
rs7748090	0.91[ASN][1000 genomes]
rs7753595	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759524	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761207	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761365	0.82[AFR][1000 genomes]
rs7762248	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765224	0.82[AFR][1000 genomes]
rs7769354	0.91[ASN][1000 genomes]
rs7775241	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321369	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321370	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321375	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9399041	0.81[AFR][1000 genomes]
rs9483501	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483502	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493434	1.00[ASN][1000 genomes]
rs9493438	0.80[AFR][1000 genomes]
rs9493440	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493441	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493447	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493449	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493455	0.91[ASN][1000 genomes]
rs9493457	0.91[ASN][1000 genomes]
rs9766095	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9767075	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133061400-133098000	Weak transcription	Spleen	Spleen
2	chr6:133065000-133098000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:133081400-133096800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:133083600-133099000	Weak transcription	Left Ventricle	heart
5	chr6:133083800-133118200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr6:133084800-133097000	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:133085000-133109000	Weak transcription	GM12878-XiMat	blood
8	chr6:133085000-133114600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr6:133085000-133119000	Weak transcription	Thymus	Thymus
10	chr6:133085200-133112200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:133085200-133119400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:133085400-133114400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:133085600-133098800	Weak transcription	Brain Hippocampus Middle	brain
14	chr6:133085600-133099800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr6:133085600-133118800	Weak transcription	Colon Smooth Muscle	Colon
16	chr6:133085800-133100000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr6:133085800-133100000	Weak transcription	Aorta	Aorta
18	chr6:133085800-133119000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr6:133086000-133112800	Weak transcription	Hela-S3	cervix
20	chr6:133086000-133113800	Weak transcription	NHEK	skin
21	chr6:133086000-133118800	Weak transcription	Fetal Kidney	kidney
22	chr6:133086200-133107800	Weak transcription	Osteobl	bone
23	chr6:133086400-133096200	Weak transcription	HMEC	breast
24	chr6:133086400-133097000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:133086400-133110200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:133086600-133099400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:133086600-133103400	Weak transcription	Brain Anterior Caudate	brain
28	chr6:133088200-133111200	Weak transcription	HUVEC	blood vessel
29	chr6:133088600-133098000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:133088600-133099200	Weak transcription	Fetal Brain Female	brain
31	chr6:133088600-133114600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr6:133089400-133100000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:133089400-133104400	Weak transcription	Brain Germinal Matrix	brain
34	chr6:133089400-133110400	Weak transcription	Colonic Mucosa	Colon
35	chr6:133089400-133111800	Weak transcription	Lung	lung
36	chr6:133089400-133119400	Weak transcription	Gastric	stomach
37	chr6:133089600-133096800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:133089600-133097200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr6:133089600-133099000	Weak transcription	Fetal Thymus	thymus
40	chr6:133089600-133099800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:133089600-133099800	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:133089600-133100000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr6:133089600-133100000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr6:133089600-133100000	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr6:133089600-133102000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr6:133089600-133111400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:133089600-133111400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr6:133089600-133111800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:133089600-133118800	Weak transcription	Fetal Heart	heart
50	chr6:133089600-133119000	Weak transcription	Primary hematopoietic stem cells	blood

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