Variant report

Variant	rs7748090
Chromosome Location	chr6:133150473-133150474
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:133150152..133152401-chr6:133214566..133217408,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1122175	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11965927	0.91[ASN][1000 genomes]
rs34688576	0.91[ASN][1000 genomes]
rs34934410	0.91[ASN][1000 genomes]
rs35148730	0.91[ASN][1000 genomes]
rs3736725	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs3756971	0.91[ASN][1000 genomes]
rs41286184	0.91[ASN][1000 genomes]
rs56908272	0.91[ASN][1000 genomes]
rs57176306	1.00[ASN][1000 genomes]
rs57685859	1.00[EUR][1000 genomes]
rs58949949	0.91[ASN][1000 genomes]
rs59357932	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59716502	0.91[ASN][1000 genomes]
rs59718818	0.91[ASN][1000 genomes]
rs60133731	0.91[ASN][1000 genomes]
rs60177375	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60631157	0.91[ASN][1000 genomes]
rs61310652	0.91[ASN][1000 genomes]
rs6569851	0.91[ASN][1000 genomes]
rs6569852	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6905784	0.91[ASN][1000 genomes]
rs6911773	0.91[ASN][1000 genomes]
rs6924403	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6926101	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6927991	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6928237	0.91[ASN][1000 genomes]
rs6928933	0.91[ASN][1000 genomes]
rs6930549	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6930703	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6934155	0.91[ASN][1000 genomes]
rs6934190	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs73547611	0.91[ASN][1000 genomes]
rs73550455	0.91[ASN][1000 genomes]
rs73554461	1.00[ASN][1000 genomes]
rs73558375	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558378	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558387	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738256	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7738569	0.91[ASN][1000 genomes]
rs7747544	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7753595	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7759524	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7761207	0.91[ASN][1000 genomes]
rs7762248	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7769354	1.00[ASN][1000 genomes]
rs7775241	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9321369	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9321370	0.91[ASN][1000 genomes]
rs9321375	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9483501	0.91[ASN][1000 genomes]
rs9483502	0.91[ASN][1000 genomes]
rs9493434	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9493440	0.91[ASN][1000 genomes]
rs9493441	0.91[ASN][1000 genomes]
rs9493447	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9493449	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9493455	1.00[ASN][1000 genomes]
rs9493457	1.00[ASN][1000 genomes]
rs9766095	0.91[ASN][1000 genomes]
rs9767075	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv886676	chr6:133111706-133168582	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	esv1806734	chr6:133125643-133168582	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133140800-133153800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:133141400-133151800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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