Variant report

Variant	rs9321375
Chromosome Location	chr6:133144449-133144450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:133142358..133145641-chr6:133228438..133230524,3	K562	blood:
2	chr6:133093368..133095334-chr6:133141299..133145047,3	K562	blood:
3	chr6:133144384..133146734-chr6:134279858..134281420,2	K562	blood:
4	chr6:133143184..133145778-chr6:133351555..133353623,2	K562	blood:
5	chr6:133140672..133145394-chr6:133829879..133833202,4	K562	blood:
6	chr6:133083233..133085227-chr6:133144108..133145647,2	K562	blood:
7	chr6:133100929..133103671-chr6:133142640..133144601,2	K562	blood:
8	chr6:132860709..132862896-chr6:133144372..133146096,2	K562	blood:
9	chr6:133142863..133144465-chr9:131937930..131940573,2	MCF-7	breast:
10	chr6:133143807..133144760-chr6:133833610..133834401,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000268050	Chromatin interaction
ENSG00000204055	Chromatin interaction
ENSG00000227954	Chromatin interaction
ENSG00000112303	Chromatin interaction
ENSG00000188483	Chromatin interaction
ENSG00000238059	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1122175	1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11965927	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34688576	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34934410	0.91[ASN][1000 genomes]
rs35148730	0.91[ASN][1000 genomes]
rs3736725	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3756971	0.91[ASN][1000 genomes]
rs41286184	0.91[ASN][1000 genomes]
rs56825762	0.87[EUR][1000 genomes]
rs56908272	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57176306	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58949949	0.91[ASN][1000 genomes]
rs59357932	1.00[ASN][1000 genomes]
rs59716502	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59718818	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60133731	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60177375	1.00[ASN][1000 genomes]
rs60631157	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61310652	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6569851	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6569852	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6905784	0.91[ASN][1000 genomes]
rs6911773	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6924403	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926101	1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6927991	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6928237	0.91[ASN][1000 genomes]
rs6928933	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6930549	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6930703	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6934155	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6934190	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73547611	0.91[ASN][1000 genomes]
rs73550455	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73554461	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558375	1.00[ASN][1000 genomes]
rs73558378	1.00[ASN][1000 genomes]
rs73558387	1.00[ASN][1000 genomes]
rs7738256	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7738569	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7744961	0.87[EUR][1000 genomes]
rs7747544	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7748090	1.00[ASN][1000 genomes]
rs7753595	1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7759524	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7761207	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7762248	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7769051	0.92[AFR][1000 genomes]
rs7769354	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775241	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9321369	1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9321370	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9483501	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9483502	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493434	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9493440	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493441	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493447	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493449	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493455	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493457	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9766095	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9767075	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv886676	chr6:133111706-133168582	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	esv1806734	chr6:133125643-133168582	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133137200-133145400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:133139400-133146400	Weak transcription	Psoas Muscle	Psoas
3	chr6:133139600-133145400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:133139800-133145400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:133140800-133153800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:133141200-133145600	Weak transcription	Liver	Liver
7	chr6:133141200-133145600	Weak transcription	HepG2	liver
8	chr6:133141400-133145400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:133141400-133145400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr6:133141400-133145400	Weak transcription	Brain Hippocampus Middle	brain
11	chr6:133141400-133145400	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:133141400-133145400	Weak transcription	Small Intestine	intestine
13	chr6:133141400-133145600	Weak transcription	Adipose Nuclei	Adipose
14	chr6:133141400-133151800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:133142200-133145400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:133142400-133146600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:133142600-133145200	Weak transcription	K562	blood
18	chr6:133144000-133144600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr6:133144000-133145800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:133144200-133144600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:133144200-133144600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:133144200-133144600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr6:133144200-133144600	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr6:133144200-133144600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr6:133144200-133144600	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr6:133144200-133144800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr6:133144200-133144800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr6:133144200-133144800	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr6:133144200-133145400	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr6:133144200-133145400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:133144400-133144600	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr6:133144400-133144600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr6:133144400-133144600	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr6:133144400-133144600	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr6:133144400-133144600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:133144400-133144600	Active TSS	Fetal Brain Male	brain
37	chr6:133144400-133144600	Enhancers	Pancreatic Islets	Pancreatic Islet
38	chr6:133144400-133144600	Enhancers	Stomach Mucosa	stomach
39	chr6:133144400-133145200	Weak transcription	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links