Variant report

Variant	rs57176306
Chromosome Location	chr6:133142168-133142169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:133139865..133142318-chr6:133176855..133179137,2	K562	blood:
2	chr6:133141835..133144313-chr6:133156927..133159674,3	K562	blood:
3	chr6:132990956..132993235-chr6:133139715..133142471,3	K562	blood:
4	chr6:133140267..133142584-chr6:133384243..133385857,2	MCF-7	breast:
5	chr6:133140432..133142390-chr6:133219540..133222428,2	MCF-7	breast:
6	chr3:64145733..64148089-chr6:133139687..133142420,2	MCF-7	breast:
7	chr6:133140438..133142973-chr6:133152186..133155729,4	K562	blood:
8	chr6:133141421..133143505-chr6:133285598..133287166,2	MCF-7	breast:
9	chr6:133111344..133113707-chr6:133142113..133144354,2	K562	blood:
10	chr6:133093368..133095334-chr6:133141299..133145047,3	K562	blood:
11	chr6:133140710..133143536-chr6:133169760..133172712,2	K562	blood:
12	chr6:133142048..133144415-chr6:133161174..133163996,2	MCF-7	breast:
13	chr6:133008525..133010705-chr6:133141120..133143788,2	K562	blood:
14	chr6:133142164..133143821-chr6:133206466..133209266,2	MCF-7	breast:
15	chr6:133139563..133143378-chr6:133869645..133873437,4	K562	blood:
16	chr15:34330929..34333080-chr6:133140289..133142201,2	MCF-7	breast:
17	chr6:133142071..133143902-chr6:133355082..133357821,2	MCF-7	breast:
18	chr6:133140291..133143900-chr6:133848629..133850657,3	MCF-7	breast:
19	chr16:69363165..69365715-chr6:133141227..133142779,2	MCF-7	breast:
20	chr6:132849284..132852259-chr6:133140271..133142677,3	MCF-7	breast:
21	chr6:133140672..133145394-chr6:133829879..133833202,4	K562	blood:
22	chr6:133140486..133142664-chr6:133322602..133325155,3	K562	blood:
23	chr6:133139605..133142425-chr6:133167716..133170536,3	MCF-7	breast:
24	chr6:133139381..133142834-chr6:134271951..134274965,4	K562	blood:
25	chr6:132976419..132978417-chr6:133140501..133142676,2	MCF-7	breast:
26	chr1:149223494..149225494-chr6:133139275..133142169,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000028839	Chromatin interaction
ENSG00000227954	Chromatin interaction
ENSG00000258429	Chromatin interaction
ENSG00000169857	Chromatin interaction
ENSG00000238059	Chromatin interaction
ENSG00000206737	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs1122175	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11965927	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34688576	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34934410	0.91[ASN][1000 genomes]
rs35148730	0.91[ASN][1000 genomes]
rs3736725	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3756971	0.91[ASN][1000 genomes]
rs41286184	0.91[ASN][1000 genomes]
rs56825762	0.87[EUR][1000 genomes]
rs56908272	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58949949	0.91[ASN][1000 genomes]
rs59357932	1.00[ASN][1000 genomes]
rs59716502	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59718818	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60133731	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60177375	1.00[ASN][1000 genomes]
rs60631157	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61310652	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6569851	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6569852	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6905784	0.91[ASN][1000 genomes]
rs6911773	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6924403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6926101	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6927991	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6928237	0.91[ASN][1000 genomes]
rs6928933	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6930549	0.91[ASN][1000 genomes]
rs6930703	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6934155	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6934190	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73547611	0.91[ASN][1000 genomes]
rs73550455	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73554461	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73558375	1.00[ASN][1000 genomes]
rs73558378	1.00[ASN][1000 genomes]
rs73558387	1.00[ASN][1000 genomes]
rs7738256	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7738569	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7744961	0.87[EUR][1000 genomes]
rs7747544	0.91[ASN][1000 genomes]
rs7748090	1.00[ASN][1000 genomes]
rs7753595	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7759524	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7761207	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7762248	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7769354	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775241	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9321369	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9321370	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9321375	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9483501	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9483502	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493434	0.91[ASN][1000 genomes]
rs9493440	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493441	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493447	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493449	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493455	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493457	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9766095	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9767075	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv886676	chr6:133111706-133168582	Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	esv1806734	chr6:133125643-133168582	Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133137200-133145400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:133137800-133142200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:133137800-133142400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:133137800-133142400	Strong transcription	Stomach Smooth Muscle	stomach
5	chr6:133137800-133143600	Weak transcription	Right Atrium	heart
6	chr6:133138400-133142400	Strong transcription	Primary B cells from cord blood	blood
7	chr6:133138400-133144400	Weak transcription	Stomach Mucosa	stomach
8	chr6:133138600-133142400	Strong transcription	Fetal Brain Female	brain
9	chr6:133138600-133142600	Strong transcription	Primary T cells from cord blood	blood
10	chr6:133138800-133142200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr6:133138800-133144400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:133139000-133142200	Strong transcription	Fetal Kidney	kidney
13	chr6:133139400-133143400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:133139400-133146400	Weak transcription	Psoas Muscle	Psoas
15	chr6:133139600-133142400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:133139600-133143400	Weak transcription	Esophagus	oesophagus
17	chr6:133139600-133144200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr6:133139600-133145400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr6:133139800-133145400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr6:133140200-133142200	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr6:133140600-133142400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr6:133140600-133142600	Weak transcription	Fetal Heart	heart
23	chr6:133140600-133142600	Weak transcription	Dnd41	blood
24	chr6:133140600-133143600	Weak transcription	Pancreas	Pancrea
25	chr6:133140800-133142200	Enhancers	NHLF	lung
26	chr6:133140800-133142400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:133140800-133142400	Weak transcription	Colonic Mucosa	Colon
28	chr6:133140800-133142400	Weak transcription	HMEC	breast
29	chr6:133140800-133142600	Weak transcription	GM12878-XiMat	blood
30	chr6:133140800-133144400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr6:133140800-133153800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:133141000-133142400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr6:133141000-133142600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr6:133141000-133142600	Weak transcription	Thymus	Thymus
35	chr6:133141000-133142600	Weak transcription	HUVEC	blood vessel
36	chr6:133141000-133143400	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr6:133141000-133143400	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr6:133141000-133143600	Weak transcription	Aorta	Aorta
39	chr6:133141000-133143800	Weak transcription	Ovary	ovary
40	chr6:133141000-133144000	Weak transcription	Fetal Intestine Small	intestine
41	chr6:133141000-133144200	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr6:133141000-133144200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr6:133141000-133144200	Weak transcription	Brain Anterior Caudate	brain
44	chr6:133141000-133144200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:133141200-133142200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr6:133141200-133142200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr6:133141200-133142200	Weak transcription	Fetal Lung	lung
48	chr6:133141200-133142400	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:133141200-133142600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr6:133141200-133142600	Enhancers	K562	blood

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