Variant report

Variant	rs7738400
Chromosome Location	chr6:133085301-133085302
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10457591	1.00[CHB][hapmap]
rs10457596	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10484629	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1122175	0.84[YRI][hapmap]
rs1128998	1.00[CHB][hapmap]
rs11962883	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11964512	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12190684	1.00[CHB][hapmap]
rs12197430	1.00[CHB][hapmap]
rs12198849	0.83[ASN][1000 genomes]
rs12203977	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12204027	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12211701	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1467403	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1467404	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3813347	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58832890	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61421874	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62424539	0.83[ASN][1000 genomes]
rs6569847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6569848	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910639	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6912936	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6915168	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6934161	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73554431	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7738071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7758703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761365	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769051	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7770081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9321367	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9321371	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9375919	1.00[CHB][hapmap]
rs9389032	1.00[CHB][hapmap]
rs9399041	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9402452	1.00[CHB][hapmap]
rs9402453	1.00[CHB][hapmap]
rs9402455	1.00[CHB][hapmap]
rs9493435	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9493437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493438	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493443	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493444	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493445	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493446	1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9493454	1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133061400-133098000	Weak transcription	Spleen	Spleen
2	chr6:133065000-133098000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:133081400-133096800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:133081800-133086800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:133083200-133085400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:133083200-133085800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
7	chr6:133083200-133086000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr6:133083200-133086600	Enhancers	Fetal Intestine Large	intestine
9	chr6:133083400-133090600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:133083600-133099000	Weak transcription	Left Ventricle	heart
11	chr6:133083800-133118200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr6:133084000-133089000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:133084400-133085800	Enhancers	Placenta	Placenta
14	chr6:133084600-133085800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr6:133084600-133085800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:133084600-133085800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:133084600-133086000	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr6:133084600-133087000	Enhancers	Fetal Stomach	stomach
19	chr6:133084600-133091200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:133084800-133085400	Enhancers	Primary B cells from peripheral blood	blood
21	chr6:133084800-133085400	Enhancers	Primary T cells from cord blood	blood
22	chr6:133084800-133085400	Enhancers	Liver	Liver
23	chr6:133084800-133085400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr6:133084800-133085600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:133084800-133085600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr6:133084800-133085600	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr6:133084800-133085600	Enhancers	Stomach Mucosa	stomach
28	chr6:133084800-133085800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr6:133084800-133086400	Enhancers	HMEC	breast
30	chr6:133084800-133086400	Enhancers	NHLF	lung
31	chr6:133084800-133089400	Weak transcription	Fetal Thymus	thymus
32	chr6:133084800-133091800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr6:133084800-133097000	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:133085000-133085400	Enhancers	Primary T cells fromperipheralblood	blood
35	chr6:133085000-133085400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:133085000-133085400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr6:133085000-133085600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr6:133085000-133085600	Enhancers	Colon Smooth Muscle	Colon
39	chr6:133085000-133085600	Enhancers	A549	lung
40	chr6:133085000-133085600	Enhancers	Monocytes-CD14+_RO01746	blood
41	chr6:133085000-133085800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr6:133085000-133085800	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr6:133085000-133085800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr6:133085000-133086000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr6:133085000-133086000	Enhancers	Hela-S3	cervix
46	chr6:133085000-133086000	Enhancers	NHEK	skin
47	chr6:133085000-133086400	Enhancers	Adipose Nuclei	Adipose
48	chr6:133085000-133086600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr6:133085000-133086600	Enhancers	NHDF-Ad	bronchial
50	chr6:133085000-133109000	Weak transcription	GM12878-XiMat	blood

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