Variant report

Variant	rs9483514
Chromosome Location	chr6:133228716-133228717
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10457596	0.86[ASN][1000 genomes]
rs12198849	0.86[ASN][1000 genomes]
rs34334052	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56148066	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59740783	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62424539	0.86[ASN][1000 genomes]
rs7769051	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532069	chr6:132776411-133462292	Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1015742	chr6:132933666-133285852	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	71 gene(s)	inside rSNPs	diseases
3	nsv869855	chr6:133190265-133244259	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9483514	C6orf192	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133224200-133229000	Weak transcription	Fetal Lung	lung
2	chr6:133228000-133229400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:133228000-133229400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:133228400-133228800	Enhancers	Osteobl	bone
5	chr6:133228400-133229000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:133228400-133229200	Enhancers	HSMMtube	muscle
7	chr6:133228400-133229400	Enhancers	NHDF-Ad	bronchial
8	chr6:133228600-133229200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:133228600-133229200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr6:133228600-133229200	Flanking Active TSS	NHLF	lung
11	chr6:133228600-133229800	Enhancers	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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