Variant report

Variant	rs72556359
Chromosome Location	chr3:53787476-53787477
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs56728015	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1001128	chr3:53659570-53927842	Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1013783	chr3:53694418-53934781	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv1002452	chr3:53742148-53802811	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:53765000-53788600	Weak transcription	Fetal Kidney	kidney
2	chr3:53768600-53801000	Strong transcription	Fetal Lung	lung
3	chr3:53773000-53807600	Strong transcription	Fetal Intestine Large	intestine
4	chr3:53774200-53789200	Weak transcription	Fetal Brain Male	brain
5	chr3:53774800-53807200	Strong transcription	Fetal Intestine Small	intestine
6	chr3:53777800-53787600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:53778600-53806400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:53778800-53797000	Weak transcription	Pancreas	Pancrea
9	chr3:53779000-53806400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr3:53779400-53787800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:53779800-53788800	Strong transcription	Brain Inferior Temporal Lobe	brain
12	chr3:53780400-53807000	Weak transcription	Fetal Brain Female	brain
13	chr3:53781800-53807400	Weak transcription	Brain Anterior Caudate	brain
14	chr3:53783800-53790000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr3:53784400-53787600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:53785000-53811200	Weak transcription	Spleen	Spleen
17	chr3:53785400-53795400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr3:53785800-53806600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr3:53786000-53795600	Weak transcription	Brain Angular Gyrus	brain
20	chr3:53786000-53808200	Weak transcription	Liver	Liver
21	chr3:53786800-53788800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr3:53787000-53788200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr3:53787000-53790000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr3:53787200-53788200	Flanking Active TSS	GM12878-XiMat	blood
25	chr3:53787200-53788600	Enhancers	Primary B cells from peripheral blood	blood
26	chr3:53787200-53788600	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr3:53787200-53788800	Enhancers	Fetal Thymus	thymus
28	chr3:53787200-53788800	Enhancers	Dnd41	blood
29	chr3:53787200-53789200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr3:53787200-53789600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr3:53787400-53787600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr3:53787400-53787600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
33	chr3:53787400-53787600	Enhancers	Colonic Mucosa	Colon
34	chr3:53787400-53787600	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr3:53787400-53787600	Enhancers	Lung	lung
36	chr3:53787400-53787800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:53787400-53787800	Enhancers	H9 Cell Line	embryonic stem cell
38	chr3:53787400-53787800	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr3:53787400-53787800	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr3:53787400-53787800	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr3:53787400-53788000	Enhancers	Primary neutrophils fromperipheralblood	blood
42	chr3:53787400-53788200	Enhancers	Primary B cells from cord blood	blood
43	chr3:53787400-53788200	Enhancers	Primary T cells from cord blood	blood
44	chr3:53787400-53788200	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr3:53787400-53788200	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr3:53787400-53788400	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr3:53787400-53788400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr3:53787400-53788400	Strong transcription	Duodenum Mucosa	Duodenum
49	chr3:53787400-53788600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr3:53787400-53788600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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