Variant report

Variant	rs725746
Chromosome Location	chr1:57386685-57386686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12408409	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12408410	0.97[ASN][1000 genomes]
rs12408424	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1342438	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1342440	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1418472	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1612309	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1616673	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1620073	0.97[ASN][1000 genomes]
rs1620115	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1622553	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1623504	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114560	0.97[ASN][1000 genomes]
rs17114572	0.97[ASN][1000 genomes]
rs17114585	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114586	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114605	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17114608	0.97[ASN][1000 genomes]
rs1741985	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741986	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741989	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1741990	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754506	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754533	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754534	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754536	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754538	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1754539	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774889	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774890	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774892	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774894	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774895	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774896	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774897	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774898	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774899	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774900	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774901	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1774902	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2772090	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57008461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57045237	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57310579	0.94[ASN][1000 genomes]
rs57637638	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58523865	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61514985	0.98[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72915427	0.97[ASN][1000 genomes]
rs72915461	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9437011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947656	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs972326	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57382200-57390200	Weak transcription	Right Ventricle	heart
2	chr1:57383200-57390800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:57384200-57387400	Enhancers	Liver	Liver
4	chr1:57385400-57388000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:57385400-57388600	Enhancers	HepG2	liver
6	chr1:57385600-57387400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:57386000-57387400	Enhancers	NHDF-Ad	bronchial
8	chr1:57386000-57388000	Enhancers	Fetal Muscle Leg	muscle
9	chr1:57386200-57387600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:57386200-57387800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:57386200-57387800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr1:57386200-57387800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr1:57386400-57386800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:57386400-57387200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:57386400-57387200	Enhancers	Fetal Brain Female	brain
16	chr1:57386400-57388000	Enhancers	Fetal Kidney	kidney
17	chr1:57386600-57387000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:57386600-57387000	Weak transcription	Fetal Stomach	stomach
19	chr1:57386600-57387800	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links