Variant report

Variant	rs72612608
Chromosome Location	chr7:78599067-78599068
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1476107	0.84[AMR][1000 genomes]
rs17151714	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17151746	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17151808	0.90[AMR][1000 genomes]
rs2216458	1.00[EUR][1000 genomes]
rs72612606	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72612607	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78596600-78599200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr7:78596800-78599400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr7:78597600-78599200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:78598600-78600000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:78598600-78603000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:78598800-78599800	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:78599000-78600200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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