Variant report

Variant	rs17151746
Chromosome Location	chr7:78589171-78589172
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10085753	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs10230752	0.92[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap]
rs10485921	0.92[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];0.82[ASN][1000 genomes]
rs11983680	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs11983739	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs1642887	0.92[CHB][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap]
rs17151686	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs17151714	0.92[CHB][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17151751	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs17151808	1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs2193713	0.82[ASN][1000 genomes]
rs2216458	0.92[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2363924	0.92[CHB][hapmap];0.95[CHD][hapmap];0.92[JPT][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes]
rs6948798	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs719413	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs72612606	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72612607	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72612608	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7801721	0.92[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap]
rs9656198	0.92[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap]
rs993515	0.83[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78588200-78589200	Enhancers	Osteobl	bone
2	chr7:78588800-78589600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:78588800-78589600	Enhancers	NHDF-Ad	bronchial

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