Variant report
| Variant | rs993515 |
|---|---|
| Chromosome Location | chr7:78556580-78556581 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10085753 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10230752 | 0.92[CHB][hapmap];1.00[JPT][hapmap] |
| rs10485921 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs11983680 | 0.85[JPT][hapmap] |
| rs11983739 | 0.85[JPT][hapmap] |
| rs1642887 | 0.92[CHB][hapmap];1.00[JPT][hapmap] |
| rs17151686 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap] |
| rs17151714 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17151746 | 0.83[CHB][hapmap];0.85[JPT][hapmap] |
| rs17151751 | 0.85[JPT][hapmap] |
| rs17151808 | 0.85[JPT][hapmap] |
| rs2193713 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2216458 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2363924 | 0.92[CHB][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs6948798 | 0.93[CHB][hapmap];1.00[JPT][hapmap] |
| rs719413 | 0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs72612606 | 0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs72612607 | 0.91[ASN][1000 genomes] |
| rs7782075 | 0.91[YRI][hapmap] |
| rs7801721 | 0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap] |
| rs9656198 | 0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv464598 | chr7:78492642-79483480 | Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv607659 | chr7:78492642-79483480 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 3 | nsv482826 | chr7:78548319-78717605 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv471642 | chr7:78548320-78717605 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
