Variant report

Variant	rs11983739
Chromosome Location	chr7:78592004-78592005
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10085753	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs10230752	0.84[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap]
rs10485921	0.84[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];0.82[ASN][1000 genomes]
rs11973622	1.00[YRI][hapmap]
rs11974090	1.00[YRI][hapmap]
rs11976704	1.00[YRI][hapmap]
rs11978411	1.00[YRI][hapmap]
rs11983680	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1642887	0.84[CHB][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap]
rs17151686	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs17151714	0.84[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17151746	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17151751	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17151808	1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[AMR][1000 genomes]
rs2193713	0.82[ASN][1000 genomes]
rs2216458	0.84[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2363924	0.84[CHB][hapmap];0.95[CHD][hapmap];0.92[JPT][hapmap];0.83[MEX][hapmap];0.86[ASN][1000 genomes]
rs6948798	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs719413	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs72612606	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72612607	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72612608	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7801721	0.84[CHB][hapmap];0.82[CHD][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap]
rs9656198	0.84[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap]
rs993515	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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