Variant report

Variant	rs1642887
Chromosome Location	chr7:78573054-78573055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10085753	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1014797	1.00[CEU][hapmap]
rs1014798	1.00[CEU][hapmap]
rs10225728	1.00[CEU][hapmap]
rs10230752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs10485921	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.99[ASN][1000 genomes]
rs10485922	1.00[CEU][hapmap]
rs11983680	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs11983739	0.84[CHB][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap]
rs17151686	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17151714	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs17151746	0.92[CHB][hapmap];0.85[JPT][hapmap];0.88[MEX][hapmap];0.81[ASN][1000 genomes]
rs17151751	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs17151808	0.85[JPT][hapmap];0.88[MEX][hapmap]
rs17406392	0.80[CEU][hapmap]
rs17471316	1.00[CEU][hapmap]
rs1799001	1.00[CEU][hapmap]
rs1799002	1.00[CEU][hapmap]
rs2193713	0.99[ASN][1000 genomes]
rs2216458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.99[ASN][1000 genomes]
rs2363924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[MEX][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2363929	1.00[CEU][hapmap]
rs41435246	1.00[CEU][hapmap]
rs6466443	1.00[CEU][hapmap]
rs6948798	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6970122	1.00[CEU][hapmap]
rs6979739	1.00[CEU][hapmap]
rs719413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs72612606	0.93[ASN][1000 genomes]
rs72612607	0.92[ASN][1000 genomes]
rs7801721	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs9656198	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs993515	0.92[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv482826	chr7:78548319-78717605	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471642	chr7:78548320-78717605	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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